PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019151032.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 703aa MW: 79587.7 Da PI: 7.9122

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019151032.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.6	5.5e-20	64	150	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yne+A++vGFsvrk k++++ +++i +++f+Csk g++ + + + ++ trtgC a ++ dg w v+k + HnHel+ XP_019151032.1 64 LYNEHAYRVGFSVRKGKQRYKASTKTIQMKRFYCSKAGFKCKADGG--VKLYSKIDTRTGCGAFVQFDVGGDGLWTVAKHMKVHNHELC 150 7*************************************999988..88899*********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence
MELYVYIFDC YVYTVYVFSV NEGLVGDSLS TDQGDLNIDG SSSIPVDEDL VGVVVSNGDE 60 AFDLYNEHAY RVGFSVRKGK QRYKASTKTI QMKRFYCSKA GFKCKADGGV KLYSKIDTRT 120 GCGAFVQFDV GGDGLWTVAK HMKVHNHELC DLDKSHLLRS HRRVGSNQLS CLKDLKQSGV 180 GVAGGIRFLK HQSGGSPLVG FTSRDAYNSL AFDTVKSLDG TDSNSLIEIF RRRQSNESDF 240 FFDFEVDSDS RLWMNHHCMN VMFGCEFLKN ERIESFVWLF KAFLRSMDDK CPQSIMTDQC 300 AAMAAAISIV FPSSRHRLCI WHIDTEAEFE FYWTRMVTEF KCHKNTWLGK LYDCREKWCP 360 AFNKDYFSGG ILSSQRSETT NHSISRRLSK TAGLCDFYSS FVSVISEWRS KENGEDFRCA 420 QGVPAMMIDN VKLLSHAREV YTIEIYFLFE EQLMKGSACH QEIVLNDGCQ YKYHVWRPDV 480 DIIRHEVSFK PINIDISCSC KLFSEMGILC CHCLRILDIN CVPSIPDKYI MKRWTKKVAA 540 LRNVNFDLLS YNVGVPPSIW VVEISRKFQK LVVSSQDNSV TRQFCDEAVE NAKKLIEAEI 600 GEMNIEGCGA SSSNGIVQDP SSRRLKGVRN KRRSSIIAKK YTIARGRRSA ANKIASNIKG 660 AVQSLVLENI SEIAGDGYLV HPTSSSSQFV RFNKSLDENV VAD

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence

MELYVYIFDC YVYTVYVFSV NEGLVGDSLS TDQGDLNIDG SSSIPVDEDL VGVVVSNGDE  60
AFDLYNEHAY RVGFSVRKGK QRYKASTKTI QMKRFYCSKA GFKCKADGGV KLYSKIDTRT  120
GCGAFVQFDV GGDGLWTVAK HMKVHNHELC DLDKSHLLRS HRRVGSNQLS CLKDLKQSGV  180
GVAGGIRFLK HQSGGSPLVG FTSRDAYNSL AFDTVKSLDG TDSNSLIEIF RRRQSNESDF  240
FFDFEVDSDS RLWMNHHCMN VMFGCEFLKN ERIESFVWLF KAFLRSMDDK CPQSIMTDQC  300
AAMAAAISIV FPSSRHRLCI WHIDTEAEFE FYWTRMVTEF KCHKNTWLGK LYDCREKWCP  360
AFNKDYFSGG ILSSQRSETT NHSISRRLSK TAGLCDFYSS FVSVISEWRS KENGEDFRCA  420
QGVPAMMIDN VKLLSHAREV YTIEIYFLFE EQLMKGSACH QEIVLNDGCQ YKYHVWRPDV  480
DIIRHEVSFK PINIDISCSC KLFSEMGILC CHCLRILDIN CVPSIPDKYI MKRWTKKVAA  540
LRNVNFDLLS YNVGVPPSIW VVEISRKFQK LVVSSQDNSV TRQFCDEAVE NAKKLIEAEI  600
GEMNIEGCGA SSSNGIVQDP SSRRLKGVRN KRRSSIIAKK YTIARGRRSA ANKIASNIKG  660
AVQSLVLENI SEIAGDGYLV HPTSSSSQFV RFNKSLDENV VAD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-57	FAR1 family protein