PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019150998.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 810aa MW: 91272.5 Da PI: 8.2708

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019150998.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.5	1.6e-11	173	250	23	90
FAR1 23 krngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +++g +k +vCs+eg+++ + + + +r+r+++r+gC+a+l++k+ +dg+++v+ +el HnH l+ XP_019150998.1 173 RQQGVAVKDLLVCSREGFKQAVQGSvvvdaaldqaPVAPKRRRVSNRVGCRARLVLKMGDDGVFVVHFIELRHNHCLC 250 4577788999**********999***999889999********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 810 aa Download sequence
MSTRLPTNFT LPTTMNLGSS EPPSLNMPTR GLDRENLSAR TCRHAPWRIG QKDLVNFGGF 60 CSNAALTSVV TLQLRHLTSP ALDVVVVVCV FRCKWLLHFV IDCLLIYGFR WWDDNIACVF 120 LDLVRSRSES QHGCVMDVSP DGTKFWTPSC DAAVRPFQGQ TFPSLAHGID FYRQQGVAVK 180 DLLVCSREGF KQAVQGSVVV DAALDQAPVA PKRRRVSNRV GCRARLVLKM GDDGVFVVHF 240 IELRHNHCLC SDVAKPFLRG NRSMDVQHQI FVLKCARANV GPNRSFRLAR EFAGSYSNVG 300 ATCVDFKNLK RDLMAFIGTS DAHIVVKKYA KKVDDCPDYV FRYDVDSQDQ LCRAFWTDPI 360 AKENFSAFGE VVSFDATYGT NRYGMVLVPF TGVDNHKRCV TFAMGLISRE DVDSYVWLLQ 420 QFKSAMGCVP SCTITDQDPS MRVAVPQVFD TTRHRFCMWH IMSKVGEKVG NVLSKDEEFR 480 RALNDVVWCE TSSVEEFERG WQDVMKKYSL VDHRWFRLMY DLRSYWIPAY FNDIFMGAID 540 AQCLAQTKLN AECEGHFPLC QTPMLIEKHA AAVYTINVFY DVQAEVIAGS FSCRAVRSNV 600 EGLVTRYEVE DDDGPVRTVS FDSGNDGVEC TCNMFSRVGL LCRHIFWVFK DRRVVSIPSR 660 YVIARWTRGA CVRQVLGVQR GGDSEVDVAI GEAWAEFFSC VTMASRSVEH VTKLNAALKD 720 FNAFLLAENG PTVRASSSKK QLFESFCGAS PDGQVNVRPP PISNNKGGGK RYKSTRELAI 780 EKSGRRQRQC QTCEKYGHNS RTCPMRNVDV

Sequence ? help Back to Top

Protein Sequence Length: 810 aa Download sequence

MSTRLPTNFT LPTTMNLGSS EPPSLNMPTR GLDRENLSAR TCRHAPWRIG QKDLVNFGGF  60
CSNAALTSVV TLQLRHLTSP ALDVVVVVCV FRCKWLLHFV IDCLLIYGFR WWDDNIACVF  120
LDLVRSRSES QHGCVMDVSP DGTKFWTPSC DAAVRPFQGQ TFPSLAHGID FYRQQGVAVK  180
DLLVCSREGF KQAVQGSVVV DAALDQAPVA PKRRRVSNRV GCRARLVLKM GDDGVFVVHF  240
IELRHNHCLC SDVAKPFLRG NRSMDVQHQI FVLKCARANV GPNRSFRLAR EFAGSYSNVG  300
ATCVDFKNLK RDLMAFIGTS DAHIVVKKYA KKVDDCPDYV FRYDVDSQDQ LCRAFWTDPI  360
AKENFSAFGE VVSFDATYGT NRYGMVLVPF TGVDNHKRCV TFAMGLISRE DVDSYVWLLQ  420
QFKSAMGCVP SCTITDQDPS MRVAVPQVFD TTRHRFCMWH IMSKVGEKVG NVLSKDEEFR  480
RALNDVVWCE TSSVEEFERG WQDVMKKYSL VDHRWFRLMY DLRSYWIPAY FNDIFMGAID  540
AQCLAQTKLN AECEGHFPLC QTPMLIEKHA AAVYTINVFY DVQAEVIAGS FSCRAVRSNV  600
EGLVTRYEVE DDDGPVRTVS FDSGNDGVEC TCNMFSRVGL LCRHIFWVFK DRRVVSIPSR  660
YVIARWTRGA CVRQVLGVQR GGDSEVDVAI GEAWAEFFSC VTMASRSVEH VTKLNAALKD  720
FNAFLLAENG PTVRASSSKK QLFESFCGAS PDGQVNVRPP PISNNKGGGK RYKSTRELAI  780
EKSGRRQRQC QTCEKYGHNS RTCPMRNVDV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	212	216	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-74	FAR1 family protein