PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019150877.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 278aa    MW: 31108.2 Da    PI: 8.8743
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019150877.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.45.9e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT +E+e l  +v+++G g Wk I r          R+  ++k++w+++
   XP_019150877.1  5 KQKWTSDEEEALRAGVAKHGAGKWKNIQRDPEfnhllHSRSNIDLKDKWRNL 56
                     79***********************************9************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MGNPKQKWTS DEEEALRAGV AKHGAGKWKN IQRDPEFNHL LHSRSNIDLK DKWRNLNVSA  60
NGPNPRDKSR TPKVKANPDS SVTPVLNAQT PASSIPASDD VAADAIVEDN SKCLLDGKTA  120
SKYNAMIYEA LSTLKDPDGP DTSTIVRFIE QRHEVPQNFR KLLSSRLRKL VLQEKLEKIQ  180
NCFRIKKELL GSPKQKESWS RHKQNQNQKT CYLGNTVEEA AVSAAYRIAE AENKSFVAAE  240
AVKEAERVSQ MAEDSIVLLQ LAKEIFEKCE NGEIVLMA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-63MYB_related family protein