PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019150702.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 729aa MW: 84631.1 Da PI: 8.8346

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019150702.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67	4.7e-21	39	130	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYAk +GF+vr +++k++ + ++ +++Cs+eg+++e+k+ t+k+rr+r+++r+gCka+++++k+++g ++v+ ++l H+H l+ XP_019150702.1 39 QFYEEYAKVAGFDVRHGSKRKNRFGQ--VSIKYMCSREGYKAERKEPnnssTVKQRRRRVSNRIGCKARMVMTKSDKGGYKVHAIQLRHTHCLC 130 6******************97777..8899******99988889999************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence
MECEMEIHDD GTKYWTPPTT NEKTPFEGQR FKTVEDGIQF YEEYAKVAGF DVRHGSKRKN 60 RFGQVSIKYM CSREGYKAER KEPNNSSTVK QRRRRVSNRI GCKARMVMTK SDKGGYKVHA 120 IQLRHTHCLC SDAAKPFLKI NRQLDIGHKT FLAHCAKANI GPTKAFRLFK EMVGSFTDVG 180 ATCIDFCNFR RDLLAYIAEA DAQMVIEDMF KRKEDNPDFY FDFDIDEEAQ LTRLFWADAE 240 CRRNYAYYGD VMSFDATYST NRYKLVFVPF TGVDNHKRCI TFGAGLIAKE DVESYEWLVT 300 KFKTAMEYTP RCTTTDQDPA LKIVVPHIMP TTRHRFCMWH IMSKVGEKVG VALLRNADFK 360 KELNNTVWDD TLTVDEFERR WTTLMRNYNL EEHRWFAQLY DARASWIPAY FNDLPMGGLL 420 RTTSRSESEN NYFGKFTNHH SSLVEFMAQY NSAIGEQRHR QSKLNAENEG SYPETKTPLS 480 IEKHAARVYT VNIFYEFQQE VWDASFNCHI TDKNNVGDIW TYKVEETGGR LFEVTEIPST 540 KLIECACKKF NRVGLLCKHV LQVMKTKGYE KIPQQYIVPR WTRDACAHPI YDVPWAKRTT 600 KSKANETTQV ANQLWNEFYN CMGLVNGWPE KMDQMLATLQ QLKKDLENER QQTQEGMNNE 660 SVFERLVGSS KPSDIQIKPP QVAKNKGSGK RLKSNREKAA TNNQKRKERT CNICDLPGHN 720 SRTCPAKLA

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence

MECEMEIHDD GTKYWTPPTT NEKTPFEGQR FKTVEDGIQF YEEYAKVAGF DVRHGSKRKN  60
RFGQVSIKYM CSREGYKAER KEPNNSSTVK QRRRRVSNRI GCKARMVMTK SDKGGYKVHA  120
IQLRHTHCLC SDAAKPFLKI NRQLDIGHKT FLAHCAKANI GPTKAFRLFK EMVGSFTDVG  180
ATCIDFCNFR RDLLAYIAEA DAQMVIEDMF KRKEDNPDFY FDFDIDEEAQ LTRLFWADAE  240
CRRNYAYYGD VMSFDATYST NRYKLVFVPF TGVDNHKRCI TFGAGLIAKE DVESYEWLVT  300
KFKTAMEYTP RCTTTDQDPA LKIVVPHIMP TTRHRFCMWH IMSKVGEKVG VALLRNADFK  360
KELNNTVWDD TLTVDEFERR WTTLMRNYNL EEHRWFAQLY DARASWIPAY FNDLPMGGLL  420
RTTSRSESEN NYFGKFTNHH SSLVEFMAQY NSAIGEQRHR QSKLNAENEG SYPETKTPLS  480
IEKHAARVYT VNIFYEFQQE VWDASFNCHI TDKNNVGDIW TYKVEETGGR LFEVTEIPST  540
KLIECACKKF NRVGLLCKHV LQVMKTKGYE KIPQQYIVPR WTRDACAHPI YDVPWAKRTT  600
KSKANETTQV ANQLWNEFYN CMGLVNGWPE KMDQMLATLQ QLKKDLENER QQTQEGMNNE  660
SVFERLVGSS KPSDIQIKPP QVAKNKGSGK RLKSNREKAA TNNQKRKERT CNICDLPGHN  720
SRTCPAKLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-97	FAR1 family protein