PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019150575.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 583aa    MW: 66158 Da    PI: 6.599
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019150575.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.89.9e-20140238190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                     +fY++YA+ vGF+vr s+ +++ r+g  +k  +vCs+eg+++  + +           +  +r+r+++r+gC+a+l++k+ +dg+++v+ +el H
  XP_019150575.1 140 DFYRQYASLVGFDVRCSSLRRN-REGVAVKDLLVCSREGFKQAVQGSvvvdaaldqaPVAPKRRRVSNRVGCRARLVLKMGDDGVFVVHFIELRH 233
                     6*****************9999.7888999**************999*******999889999******************************** PP

            FAR1  86 nHela 90 
                     nH l+
  XP_019150575.1 234 NHCLC 238
                     **998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    
MSGLDPYDLH NIDSMDVRFD QPLRVPGGDI YDTVDAVTQP LCGDEPLPYF DSDYSFHNSS  60
FEHSDSYLQS AIVLLIYGFR WWVDNIACVF LDLVRSRSES QQGCVMDVSP DGTKFWTPSC  120
DAAVRPFEGQ TFPSLAHGID FYRQYASLVG FDVRCSSLRR NREGVAVKDL LVCSREGFKQ  180
AVQGSVVVDA ALDQAPVAPK RRRVSNRVGC RARLVLKMGD DGVFVVHFIE LRHNHCLCSD  240
VAKPFLRGNR SMDVQHQIFV LKCARANVGP NRSFRLAREF AGSYSNVGAT CVDFKNLKRD  300
LMAFIRTSDA HIVVKKYAKK VDDCPDYVFR YDVDSQDQLC RAFWTDPIAK ENFLAFGEVV  360
SFDATYGTNR YGMVLVPFTG VDNHKRGVTF AMGLISREDV DSYVWLLQQF KSAMSCVPSC  420
TITDQDPSMR VAVPQVFDTT RHRFCMWHIM SKVGEKVGNV LSKDEEFRRA LNDVVWCETS  480
SVEEFERGWQ DVMKKHSLGD HRWFRLMYDL RSYWIPAYFN DIFMGGLLRT TSRSEAANSV  540
FGSCTNQHAS LSELFNNFEG AIDAQRLAQA KLNAECEGHF PLC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200204KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-68FAR1 family protein