PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019150539.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 692aa MW: 78232.1 Da PI: 8.7751

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019150539.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.9	2.2e-20	105	192	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Yn YA++vGFsvrk +++++ +++i ++ f C k g++e+ ++ + ++ r+gC a ++ d+ w vtk ++eHnHel++ XP_019150539.1 105 LYNGYAYRVGFSVRKGQQRYKASTKSIQMKGFFCAKAGYKEKPNSG--VKLYSKIDIRIGCGALVQFDVGGDEMWTVTKHVKEHNHELCS 192 7*************************************999887..888999********************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence
MASQCILASQ VSPMHTRRAI QVHLVRTYEV PQLRGGASAS KSKELLFHDQ EGTYIHGTIS 60 REDVAKYHTV FIEGKMEETA VRGEDSIVDL ISAIPVSNSD EAFELYNGYA YRVGFSVRKG 120 QQRYKASTKS IQMKGFFCAK AGYKEKPNSG VKLYSKIDIR IGCGALVQFD VGGDEMWTVT 180 KHVKEHNHEL CSFGKSHMLR SHRRVGNNHL EYLKDMKNSG VALADMRFLE HQSGGSPLVG 240 FTNRDAYNSM TSESLKSLDG TDSNSLIEIF RRRAFLKSMD GKCPQTIMTD QCSAMAAGIS 300 MVFPTSCHRI CIWHIGENSK KHIKALRNHK DFLNMFNCVL KYTETEAEFE VYWTRMVTEY 360 KCHKNTWLEK LYDCREKWCP AFNKDYFSGG ILSSQRSETT NHSISRRLSK TAGLCDFYSS 420 FVSVISEWRS KENGEDFRCS QGVPAMMMDH VKLLSHAREC KYHVWRPDID IIRHEVSFKA 480 INLDICCSCK LFSELGILCC HCLRILHVHC VSSIPDKYIL KRWTKKVVEG RHVDIASVFY 540 NVGVPSSIWA VEISRKFQRL IVSSQDNSVA RQFCDEAVEN ARKNVEAEIG DVNIEEGVVS 600 SSSGIVQDPS SRRSKGVRNK RSSSVIEKKY NAARGRKSAA NKLASITKGS VQSLVLENIS 660 EIARDGYLVH PSSGGSQFVY FNKNLDHNVD ID

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence

MASQCILASQ VSPMHTRRAI QVHLVRTYEV PQLRGGASAS KSKELLFHDQ EGTYIHGTIS  60
REDVAKYHTV FIEGKMEETA VRGEDSIVDL ISAIPVSNSD EAFELYNGYA YRVGFSVRKG  120
QQRYKASTKS IQMKGFFCAK AGYKEKPNSG VKLYSKIDIR IGCGALVQFD VGGDEMWTVT  180
KHVKEHNHEL CSFGKSHMLR SHRRVGNNHL EYLKDMKNSG VALADMRFLE HQSGGSPLVG  240
FTNRDAYNSM TSESLKSLDG TDSNSLIEIF RRRAFLKSMD GKCPQTIMTD QCSAMAAGIS  300
MVFPTSCHRI CIWHIGENSK KHIKALRNHK DFLNMFNCVL KYTETEAEFE VYWTRMVTEY  360
KCHKNTWLEK LYDCREKWCP AFNKDYFSGG ILSSQRSETT NHSISRRLSK TAGLCDFYSS  420
FVSVISEWRS KENGEDFRCS QGVPAMMMDH VKLLSHAREC KYHVWRPDID IIRHEVSFKA  480
INLDICCSCK LFSELGILCC HCLRILHVHC VSSIPDKYIL KRWTKKVVEG RHVDIASVFY  540
NVGVPSSIWA VEISRKFQRL IVSSQDNSVA RQFCDEAVEN ARKNVEAEIG DVNIEEGVVS  600
SSSGIVQDPS SRRSKGVRNK RSSSVIEKKY NAARGRKSAA NKLASITKGS VQSLVLENIS  660
EIARDGYLVH PSSGGSQFVY FNKNLDHNVD ID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	9e-35	FAR1 family protein