PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019150517.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 327aa MW: 37080.4 Da PI: 6.7189

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019150517.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.2	2.1e-18	23	115	2	84
trihelix 2 WtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 Wt qe+++Liea+r ++er r++ + +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++ + ++ + + + XP_019150517.1 23 WTVQETMVLIEAKRMDDERRMRRQagessggergkPTELRWKWVEDYCWSNGCLRSQNQCNDKWDNLMRDFKKVREYERRVSGDND-DNKSYWK 115 ***********9766666654334455555555999***************************************9854444.4444554 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MEVVVSGEQG GSNVMREYRK GNWTVQETMV LIEAKRMDDE RRMRRQAGES SGGERGKPTE 60 LRWKWVEDYC WSNGCLRSQN QCNDKWDNLM RDFKKVREYE RRVSGDNDDN KSYWKLERNE 120 RKENNLPTNM LREIYEALVE VVDRKGQRVV VVGGGSVSTS GFIPHHHLPP PMQQQSPLEA 180 ALPLPPPPPP QAAAQTPPLH YQDQPHCTTQ PFPRMCDSSD PDTSEHSDSP AKRRRMGEGT 240 SGTQEVGPAI SRSAALIAEA IQSCEEREER RHRELLSLHE RRLQIEESKA EINRQGINGL 300 VDAINRLANS ILTLATNNNN QPGAPPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	36	45	RMDDERRMRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	5e-54	Trihelix family protein