PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019150385.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 804aa MW: 93812.2 Da PI: 8.547

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019150385.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.9	4.5e-25	80	169	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y +YAk+ GF +rk++ +ks++n+ ++ ++fvCskeg+r+++ + +++++ ++ etr+gCka++ v++++++kw ++k+ +HnH la XP_019150385.1 80 CYTNYAKHEGFGIRKNRIQKSRKNQMVIGQEFVCSKEGYRAKKYLErDNRKKPPSDETRMGCKAMIYVSRKDEDKWIIYKFTRDHNHVLA 169 69*************************************998874566667999*****************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 804 aa Download sequence
MATFHDNKDH NIVEIEEDHG CEITTELSES NHDELVNSGE FNIVEIEQNA SANAKSDVNN 60 ETIELCIGME FQSLDDVLMC YTNYAKHEGF GIRKNRIQKS RKNQMVIGQE FVCSKEGYRA 120 KKYLERDNRK KPPSDETRMG CKAMIYVSRK DEDKWIIYKF TRDHNHVLAS PSSARFHRVH 180 RKRTKSQRNL IDVLDESGIR PSKIMSVLVT ESGGIDRVGC TERDIQNYLS NKRQKQLEKG 240 DAQAMLNYFK ECQSKNPGFF NAIQMDTEGQ LANFFWVDSR SRVAYKFFGD VVTFDPTYLT 300 NRYKMPFVPF TGVNHHHQSI LFGCALLWDE TVETFVWLLN TWLGAMDGCH PKIIITDQDT 360 TITTVIAKVL LNTAHHFCMW HIEKKFPKNL SHVYHKFDDF KFQFSHCIHR IYIPNDFEVE 420 WEKILDKYGL RGNSWLEKLY SICEKWIPVY VRTSFCAGMS TTQRSESMNK YFKDYINANT 480 PISKFVVQYD KALDARYNKE TEKTFKTLNS KPILKTLYPM EEEASKVYTR KMFRMFQDEL 540 IHSQQYVAKK IITIEHESVY RVHEFDKEKL EYIVTFMSSS TTIECSCHMF EFLGILCRHQ 600 LMVLIKKNVY SLPKHYILKR WTTDAKKGEI TSTSNKEEMS DVNMCSTTLF NNIMVHSLQL 660 SEKASRSKKH YDTTIEGMQC LFKKLDALKI DDGITSSTGC LTSIISHQDD DDNNVAMRDP 720 PRVTTKGRPR SIRMKGALEL KSNGVTCSTC KKKGHTKRTC TLKNKNMMDN NRQLGQMKRT 780 DFDENNEDIR NVARFMFYRP SLQI

Sequence ? help Back to Top

Protein Sequence Length: 804 aa Download sequence

MATFHDNKDH NIVEIEEDHG CEITTELSES NHDELVNSGE FNIVEIEQNA SANAKSDVNN  60
ETIELCIGME FQSLDDVLMC YTNYAKHEGF GIRKNRIQKS RKNQMVIGQE FVCSKEGYRA  120
KKYLERDNRK KPPSDETRMG CKAMIYVSRK DEDKWIIYKF TRDHNHVLAS PSSARFHRVH  180
RKRTKSQRNL IDVLDESGIR PSKIMSVLVT ESGGIDRVGC TERDIQNYLS NKRQKQLEKG  240
DAQAMLNYFK ECQSKNPGFF NAIQMDTEGQ LANFFWVDSR SRVAYKFFGD VVTFDPTYLT  300
NRYKMPFVPF TGVNHHHQSI LFGCALLWDE TVETFVWLLN TWLGAMDGCH PKIIITDQDT  360
TITTVIAKVL LNTAHHFCMW HIEKKFPKNL SHVYHKFDDF KFQFSHCIHR IYIPNDFEVE  420
WEKILDKYGL RGNSWLEKLY SICEKWIPVY VRTSFCAGMS TTQRSESMNK YFKDYINANT  480
PISKFVVQYD KALDARYNKE TEKTFKTLNS KPILKTLYPM EEEASKVYTR KMFRMFQDEL  540
IHSQQYVAKK IITIEHESVY RVHEFDKEKL EYIVTFMSSS TTIECSCHMF EFLGILCRHQ  600
LMVLIKKNVY SLPKHYILKR WTTDAKKGEI TSTSNKEEMS DVNMCSTTLF NNIMVHSLQL  660
SEKASRSKKH YDTTIEGMQC LFKKLDALKI DDGITSSTGC LTSIISHQDD DDNNVAMRDP  720
PRVTTKGRPR SIRMKGALEL KSNGVTCSTC KKKGHTKRTC TLKNKNMMDN NRQLGQMKRT  780
DFDENNEDIR NVARFMFYRP SLQI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-160	FAR1 family protein