PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019150196.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 300aa MW: 33057.1 Da PI: 8.0548

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019150196.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	9.8e-19	131	185	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k XP_019150196.1 131 RKKLRLTKDQSAILEETFKEHNTLNPKQKLGLAKRLGLRPRQVEVWFQNRRARTK 185 78889************************************************98 PP
2	HD-ZIP_I/II	126.8	9.2e-41	131	219	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+k+q+++LEe+F+e+++L+p++K la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke ++Lr+ XP_019150196.1 131 RKKLRLTKDQSAILEETFKEHNTLNPKQKLGLAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLHKEIQQLRA 219 69*************************************************************************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MLEYQDLGLS LKLGFSGESC RASETPQNLN LSASSSSSHS SPFHSSPCWA DRSSDACGGG 60 SEAAAFLKGI DVNRAPAAAA DGEEEAWVSS SSPNNSTVSS GSKRSEREDQ ETERACSRGI 120 SDEEDGGEAS RKKLRLTKDQ SAILEETFKE HNTLNPKQKL GLAKRLGLRP RQVEVWFQNR 180 RARTKLKQTE VDCEVLKRCC ENLTEENRRL HKEIQQLRAF KLSPHFYMQM PPPTTLTMCP 240 SCECVAVPPP ASSSPAIYSY GSLVTTNRNG LAKALPLQHM GTCVDPHRRF DVTRPNTLKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	136	SRKKLRL
2	180	188	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	6e-77	HD-ZIP family protein