PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019149868.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 380aa MW: 42948.5 Da PI: 8.1453

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019149868.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57	6.5e-18	121	215	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY +YA +GF++r +++++ r g + + Cs+eg++ ++ ++ ++ ++r+r +tr+gC+a++ +++k+g ++++ lel H+H l XP_019149868.1 121 DFYGAYAIIAGFDIRHGTKRRN-RAGAVHLKYILCSREGYKPKKMSSsdkgttASPKKRRRLSTRVGCNARIGFTRRKSGSYKIHALELWHTHCL 214 6***************9999.6777999999***9998888899998889999********************************99 PP FAR1 90 a 90 + XP_019149868.1 215 C 215 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MLRYEKGSLK CVGSEDNPTL PPENLCTNGL NYDAIPAENS SNYERTKLRP TTDDRSAPIQ 60 YDAIPDSMEA LDPGAQHNGD EATECNMVVL PDGTKQWLPK CNSENTPYIG QEFATLENGV 120 DFYGAYAIIA GFDIRHGTKR RNRAGAVHLK YILCSREGYK PKKMSSSDKG TTASPKKRRR 180 LSTRVGCNAR IGFTRRKSGS YKIHALELWH THCLCSDIGR PFLKINRKLD IGHKIFVANC 240 ARANIGSTKS WRLYKEMVGS FSDIGATSTD FCNFRRDLLA YIAGADAQMV VEDMYKNKEM 300 EPDFYFDFDL NEDRELCRLF WADTISRKNF ACFGDVMSFD ATYSTNRYKL VFVPFTGVDN 360 HKRSITFGAG LIAREDIDSY

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MLRYEKGSLK CVGSEDNPTL PPENLCTNGL NYDAIPAENS SNYERTKLRP TTDDRSAPIQ  60
YDAIPDSMEA LDPGAQHNGD EATECNMVVL PDGTKQWLPK CNSENTPYIG QEFATLENGV  120
DFYGAYAIIA GFDIRHGTKR RNRAGAVHLK YILCSREGYK PKKMSSSDKG TTASPKKRRR  180
LSTRVGCNAR IGFTRRKSGS YKIHALELWH THCLCSDIGR PFLKINRKLD IGHKIFVANC  240
ARANIGSTKS WRLYKEMVGS FSDIGATSTD FCNFRRDLLA YIAGADAQMV VEDMYKNKEM  300
EPDFYFDFDL NEDRELCRLF WADTISRKNF ACFGDVMSFD ATYSTNRYKL VFVPFTGVDN  360
HKRSITFGAG LIAREDIDSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	175	181	PKKRRRL
2	177	181	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-32	FAR1 family protein