PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019149816.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 523aa MW: 55054.2 Da PI: 6.0211

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019149816.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.7e-09	342	390	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_019149816.1 342 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 390 58***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence
MDKGGKDEAM AAKRGDDAMS FQSANVSSDW QINGSDLANT PIGMIPNSNP MVDAFCLNVW 60 DQSASSASLG FCDANVHSNV SISSPFGGGT SGGFTTALRG GVDRGVGMGW HPANTMLKTG 120 MLLPTAPAVV PPNLPQFPAD SDFLQRAARF SCFSGGNLGD MMNPFNVPES LSPYFRGLTP 180 TQRPQQVFVG SNGLKPAPAP APAGEISNGA ADGSPLNNDS AIEYAVGSRN SAKEGGGAFG 240 NEANEPECSS RGGHDVSEGA GGESSASKKR KRSGQDAETD QNKGTPQPAE AATDQTDKKG 300 DQNVTATPSK PGGKGSKPGS QASDNPKEDY IHIRARRGQA TNSHSLAERV RREKISERMK 360 FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVNPRLEFN IDGLLAKDIL 420 QSRAGPSSFP HDMTMPYPPA HPPPSTLIQA GLPSLGSSAD AIRRTINSHL ATASGSFKEP 480 TPQVPSMWDD ELHNVVQMGF NPSAPLDSQD IGSLPPGHMK SEP

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence

MDKGGKDEAM AAKRGDDAMS FQSANVSSDW QINGSDLANT PIGMIPNSNP MVDAFCLNVW  60
DQSASSASLG FCDANVHSNV SISSPFGGGT SGGFTTALRG GVDRGVGMGW HPANTMLKTG  120
MLLPTAPAVV PPNLPQFPAD SDFLQRAARF SCFSGGNLGD MMNPFNVPES LSPYFRGLTP  180
TQRPQQVFVG SNGLKPAPAP APAGEISNGA ADGSPLNNDS AIEYAVGSRN SAKEGGGAFG  240
NEANEPECSS RGGHDVSEGA GGESSASKKR KRSGQDAETD QNKGTPQPAE AATDQTDKKG  300
DQNVTATPSK PGGKGSKPGS QASDNPKEDY IHIRARRGQA TNSHSLAERV RREKISERMK  360
FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVNPRLEFN IDGLLAKDIL  420
QSRAGPSSFP HDMTMPYPPA HPPPSTLIQA GLPSLGSSAD AIRRTINSHL ATASGSFKEP  480
TPQVPSMWDD ELHNVVQMGF NPSAPLDSQD IGSLPPGHMK SEP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	268	273	KKRKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	6e-93	bHLH family protein