PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019149814.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 543aa MW: 57367 Da PI: 6.8561

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019149814.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	7e-09	362	410	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_019149814.1 362 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 410 58***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MKPSKNVLQR TKSSKLSEIR MDKGGKDEAM AAKRGDDAMS FQSANVSSDW QINGSDLANT 60 PIGMIPNSNP MVDAFCLNVW DQSASSASLG FCDANVHSNV SISSPFGGGT SGGFTTALRG 120 GVDRGVGMGW HPANTMLKTG MLLPTAPAVV PPNLPQFPAD SDFLQRAARF SCFSGGNLGD 180 MMNPFNVPES LSPYFRGLTP TQRPQQVFVG SNGLKPAPAP APAGEISNGA ADGSPLNNDS 240 AIEYAVGSRN SAKEGGGAFG NEANEPECSS RGGHDVSEGA GGESSASKKR KRSGQDAETD 300 QNKGTPQPAE AATDQTDKKG DQNVTATPSK PGGKGSKPGS QASDNPKEDY IHIRARRGQA 360 TNSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL 420 ATVNPRLEFN IDGLLAKDIL QSRAGPSSFP HDMTMPYPPA HPPPSTLIQA GLPSLGSSAD 480 AIRRTINSHL ATASGSFKEP TPQVPSMWDD ELHNVVQMGF NPSAPLDSQD IGSLPPGHMK 540 SEP

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MKPSKNVLQR TKSSKLSEIR MDKGGKDEAM AAKRGDDAMS FQSANVSSDW QINGSDLANT  60
PIGMIPNSNP MVDAFCLNVW DQSASSASLG FCDANVHSNV SISSPFGGGT SGGFTTALRG  120
GVDRGVGMGW HPANTMLKTG MLLPTAPAVV PPNLPQFPAD SDFLQRAARF SCFSGGNLGD  180
MMNPFNVPES LSPYFRGLTP TQRPQQVFVG SNGLKPAPAP APAGEISNGA ADGSPLNNDS  240
AIEYAVGSRN SAKEGGGAFG NEANEPECSS RGGHDVSEGA GGESSASKKR KRSGQDAETD  300
QNKGTPQPAE AATDQTDKKG DQNVTATPSK PGGKGSKPGS QASDNPKEDY IHIRARRGQA  360
TNSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL  420
ATVNPRLEFN IDGLLAKDIL QSRAGPSSFP HDMTMPYPPA HPPPSTLIQA GLPSLGSSAD  480
AIRRTINSHL ATASGSFKEP TPQVPSMWDD ELHNVVQMGF NPSAPLDSQD IGSLPPGHMK  540
SEP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	288	293	KKRKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	8e-93	bHLH family protein