PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7BG053850.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

M-type_MADS

Protein Properties

Length: 404aa MW: 44864.7 Da PI: 6.1374

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG053850.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	44.2	2.5e-14	12	59	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie+k r +tfskRr g+ K A LSvL++++vav++ ++g ++ + TRIDC7BG053850.1 12 FIEDKKERGITFSKRRDGLYKMACDLSVLTGVRVAVVLEMESGIMHSF 59 79*************************************999999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MPRREKREGI CFIEDKKERG ITFSKRRDGL YKMACDLSVL TGVRVAVVLE MESGIMHSFG 60 TPSAAPIVDS FFSGGPLVEP LADEATNASI KMLQREVARL DMESVTYEKR AKLSLERIKN 120 IRDENPGIVT NLIFSREEDL SLEDLNKLFD ELLRVREDIR RCMPPLHPGS EPKTGGPSIP 180 RNELTLRGPS LDYLKTRFSS QQPSSSHCIP TQVLSSVPLP SKPQDTMEPH FPMQVSLRST 240 PPALAPHLTS NLQPIVHQVP KIFQSAPPSL GSHWTSLAQP IPNLVQDLPP HLQNYPNSYS 300 AMEPPLKNTI TNSTIGSIVE AHPQLFYSNG NEFSIGKSSS NGTLAYASSN QPHYNGNLGM 360 EAYLGYNGNN VGQYNMDYDE FVNAPLQSSN GNDDYVHSWF EGLL

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MPRREKREGI CFIEDKKERG ITFSKRRDGL YKMACDLSVL TGVRVAVVLE MESGIMHSFG  60
TPSAAPIVDS FFSGGPLVEP LADEATNASI KMLQREVARL DMESVTYEKR AKLSLERIKN  120
IRDENPGIVT NLIFSREEDL SLEDLNKLFD ELLRVREDIR RCMPPLHPGS EPKTGGPSIP  180
RNELTLRGPS LDYLKTRFSS QQPSSSHCIP TQVLSSVPLP SKPQDTMEPH FPMQVSLRST  240
PPALAPHLTS NLQPIVHQVP KIFQSAPPSL GSHWTSLAQP IPNLVQDLPP HLQNYPNSYS  300
AMEPPLKNTI TNSTIGSIVE AHPQLFYSNG NEFSIGKSSS NGTLAYASSN QPHYNGNLGM  360
EAYLGYNGNN VGQYNMDYDE FVNAPLQSSN GNDDYVHSWF EGLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28460.1	4e-10	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG053850.1