PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC7BG048400.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 291aa    MW: 30142.2 Da    PI: 10.0602
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC7BG048400.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.9e-072751226
                      -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                      k ++C  f+ t  C++G++C+F H 
  TRIDC7BG048400.1 27 KSKPCTKFFSTAGCPFGSSCHFLHN 51
                      7789********************7 PP
2zf-CCCH246.6e-0893118227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       kt+lC+ f     Ck G++C+FaHg+
  TRIDC7BG048400.1  93 KTRLCNKFNTAEGCKWGNKCHFAHGE 118
                       9***********************96 PP
3zf-CCCH37.54e-12257282127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt+lC++f + G C +GdrC+FaHg+
  TRIDC7BG048400.1 257 FKTKLCDNFNK-GSCTFGDRCHFAHGE 282
                       69*********.*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
VPEGTNGGAA VKRARESESV QTGVGSKSKP CTKFFSTAGC PFGSSCHFLH NFPGGHQAVS  60
KMTNLGGPAV SAPQGRMPMG PGVPDGPPTP SLKTRLCNKF NTAEGCKWGN KCHFAHGERE  120
LGKPMLLNNS MAPPMGPRPN GHFQPPPMPG PDMVPPSTFG ASATAKISVD ASLAGAIIGK  180
GGVNTKHISR MTGAKLAIRD NEADPNHKNI ELEGSFDQVN HASAMVKELI LRIGGNAPPQ  240
AKNPGRGPAG GGGGSNFKTK LCDNFNKGSC TFGDRCHFAH GESELRKSAA A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.16e-55C3H family protein