PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC7BG047950.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 335aa    MW: 37300.8 Da    PI: 8.2166
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC7BG047950.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.41.6e-122563543
                      SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
            SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                      +k  r  t  kRr+g+ KKAeEL ++C+a+++v+++++ 
  TRIDC7BG047950.1 25 DKKSRFSTSKKRREGLRKKAEELAIMCNAKACVLVYGEG 63
                      6777888889***************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
ETLLCCFIPL LEMARKKVTL RYILDKKSRF STSKKRREGL RKKAEELAIM CNAKACVLVY  60
GEGEAVPQVF PSPAEAVPIL NRYKNMPEGN FKKTVNHEGF LNQHFDKLQA KGHKLQGICE  120
DNETRILLHK AMLRSNLSSL DGLNIEDLTN VGRKLEVILQ SMGERITKIS GQPPLFQPQE  180
PYITNTMDMG SPAMYHTPPP APYVTDYMHM KSPSTYQAPP PAPYITHNMD MGSSMMYPAA  240
SPVRYGTSGM DMGPPTMFKA PPQQQEDSLH MMRYGGDLNA LVYSGHNSSG HNDTNTSIVF  300
HSGDIHPKRS FEVGFGWQFG GADPEASSSS PFPPM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11537RKKVTLRYILDKKSRFSTSKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28700.19e-18M-type_MADS family protein