PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC7BG019790.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 413aa MW: 46087.2 Da PI: 8.256

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG019790.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.1	1.1e-06	33	56	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ff+ G C G+ C F+H+ TRIDC7BG019790.2 33 KRVLCKFFMH-GACLKGEYCEFSHD 56 89**8888.***********5 PP
2	zf-CCCH	27.8	4.4e-09	64	84	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f++r G C+yG+rC++ H+ TRIDC7BG019790.2 64 VCTFYQR-GSCSYGNRCRYDHV 84 5999999.*************7 PP
3	zf-CCCH	21.6	3.8e-07	195	217	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa++G C+yG+ C+ +Hg TRIDC7BG019790.2 195 MPICS-FAAGGNCPYGEECPHMHG 217 68999.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
TRRDGDDGGG EGVSRVRVPG FGAHPVGSAM STKRVLCKFF MHGACLKGEY CEFSHDWSDQ 60 ANNVCTFYQR GSCSYGNRCR YDHVKVSRNN PVPPLPSSST ATRNSPLRPP PSSSTATHVA 120 STSPQLLSSG RPLHLGHQTN SSNQRQQISM DKLAVSESKP AWRNEVQLNS VSEDGIGWSS 180 IQTAQNQTSM KLADMPICSF AAGGNCPYGE ECPHMHGDLC AFCGKMCLHP YRPDERQEHI 240 KLCEKNHKRL EALKRSQEIE CSVCLDRVLS KSTAAERKFG LLSECDHPFC ISCIRNWRGN 300 SPTSGMDVNS ALRACPICRK LSYYVIPSVL WYFSKEEKLE ITENYKAKLK SIDCKYFDFG 360 TGTCPFGTSC FYKHAYRDGR LEEVVLRHLD CDDGSTLIAK NIRLSDFLGR LHL

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

TRRDGDDGGG EGVSRVRVPG FGAHPVGSAM STKRVLCKFF MHGACLKGEY CEFSHDWSDQ  60
ANNVCTFYQR GSCSYGNRCR YDHVKVSRNN PVPPLPSSST ATRNSPLRPP PSSSTATHVA  120
STSPQLLSSG RPLHLGHQTN SSNQRQQISM DKLAVSESKP AWRNEVQLNS VSEDGIGWSS  180
IQTAQNQTSM KLADMPICSF AAGGNCPYGE ECPHMHGDLC AFCGKMCLHP YRPDERQEHI  240
KLCEKNHKRL EALKRSQEIE CSVCLDRVLS KSTAAERKFG LLSECDHPFC ISCIRNWRGN  300
SPTSGMDVNS ALRACPICRK LSYYVIPSVL WYFSKEEKLE ITENYKAKLK SIDCKYFDFG  360
TGTCPFGTSC FYKHAYRDGR LEEVVLRHLD CDDGSTLIAK NIRLSDFLGR LHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-120	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG019790.2