PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7BG019060.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 784aa MW: 84018.9 Da PI: 5.3188

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG019060.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00046	189	210	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp Cgk F++ ++ H+r+H TRIDC7BG019060.1 189 QCPECGKLFRNDKSMFGHLRSH 210 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence
MSKRSGLLCV LLLSLVVLLQ AASLRLPVAA GSTRQLVVAA AAARIGDEFL CQDPIGRPSS 60 SSVMFSNAGD ELSSLPAAPA AAFTQQGFTA PGAAFNQEGF TAPADAFTQE GFLGDEAFSS 120 GDKYPKEDED ELLSGDGYSR DPERSVEEEG PLGEEEEDGD DLLLSVKQGP QVEPSSNNYE 180 LDGSSANVQC PECGKLFRND KSMFGHLRSH PNRGYKKGSG HLKSRPSKGY KPPARPRPLP 240 SRNGKLSPLP SRNTKLSPLP SRNANLSQLP SRNGNLSPPA NDSSRVARYS QRDPELSRFE 300 VMIAYVMLTL KQRGDGVAQD QSHKRKHESS ELDVPEEDLV RNQAGDDVML GDNHGTSVAE 360 MLGDDVVHRS EQGSSLVEMA VDDAVLGDKH GTSVAEMPGD DAVHRSEQGS SLVEMAVDDV 420 VLGDKHGTSV AEMAGNDVVL GDKNSTSVAE MAGNNVVLGD KHGTSVAEMP GDDAVYRSEQ 480 GSSLAEMAGA DVVLLNEHHG SAAVMAGDDV VHRSEQGSSL AEMAGDDVML GDKHGTSVAE 540 MPGDDAVHRS EQGSSLAKMA GDDVVLPNEH HGSVAVMEGD VVVRNEHGNV EVPRKKGRKK 600 SKESTEARRK EKVPSASTVK RSYTCKQCKA EFPTHQALGG HMAAHNKDKR IQAQNEQAAA 660 TWEAHQNQID RSLNRLVTSS MKPAWEAHQS QKGQNPNRQE TKGGGEEPRQ GGGMFMSTRE 720 LLMERYTKLF NQGWLSRQEA GGSSKRQHTE NKDGGSPSIA PPLADGGRRR PFDIDLNAVA 780 PEKE

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence

MSKRSGLLCV LLLSLVVLLQ AASLRLPVAA GSTRQLVVAA AAARIGDEFL CQDPIGRPSS  60
SSVMFSNAGD ELSSLPAAPA AAFTQQGFTA PGAAFNQEGF TAPADAFTQE GFLGDEAFSS  120
GDKYPKEDED ELLSGDGYSR DPERSVEEEG PLGEEEEDGD DLLLSVKQGP QVEPSSNNYE  180
LDGSSANVQC PECGKLFRND KSMFGHLRSH PNRGYKKGSG HLKSRPSKGY KPPARPRPLP  240
SRNGKLSPLP SRNTKLSPLP SRNANLSQLP SRNGNLSPPA NDSSRVARYS QRDPELSRFE  300
VMIAYVMLTL KQRGDGVAQD QSHKRKHESS ELDVPEEDLV RNQAGDDVML GDNHGTSVAE  360
MLGDDVVHRS EQGSSLVEMA VDDAVLGDKH GTSVAEMPGD DAVHRSEQGS SLVEMAVDDV  420
VLGDKHGTSV AEMAGNDVVL GDKNSTSVAE MAGNNVVLGD KHGTSVAEMP GDDAVYRSEQ  480
GSSLAEMAGA DVVLLNEHHG SAAVMAGDDV VHRSEQGSSL AEMAGDDVML GDKHGTSVAE  540
MPGDDAVHRS EQGSSLAKMA GDDVVLPNEH HGSVAVMEGD VVVRNEHGNV EVPRKKGRKK  600
SKESTEARRK EKVPSASTVK RSYTCKQCKA EFPTHQALGG HMAAHNKDKR IQAQNEQAAA  660
TWEAHQNQID RSLNRLVTSS MKPAWEAHQS QKGQNPNRQE TKGGGEEPRQ GGGMFMSTRE  720
LLMERYTKLF NQGWLSRQEA GGSSKRQHTE NKDGGSPSIA PPLADGGRRR PFDIDLNAVA  780
PEKE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	594	610	RKKGRKKSKESTEARRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37740.1	3e-06	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG019060.1