PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7BG004490.11

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 635aa MW: 70942 Da PI: 9.2468

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG004490.11	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.7	5.1e-20	146	232	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Yn+YAk GF v++++s++ +ng+ + tf Cs++gk+++++ + +++ + tgCkak+++++ dg+++++++ l+HnH+l+p TRIDC7BG004490.11 146 EYYNTYAKAKGFGVTRRSSNRD-DNGQLKYLTFSCSRYGKAQSNSGN---MLKPSRTVGTGCKAKINITRAPDGRFHLSTVILDHNHALSP 232 69*************99998.8889************9988...88999999****************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence
CSSFSPDRRL LLSLALIAEV DFCGRKTVSP PKPLWSPPIT VSPRGAAHHS ITAGRRRSRR 60 QLGGGVRAGV PDPARGRGAR RRGMDDGIGG VQESSDMSIS SDDDGIKQQR ESNVELAHDR 120 AEAHPDGLLR EPEVGMSFGT ETEVREYYNT YAKAKGFGVT RRSSNRDDNG QLKYLTFSCS 180 RYGKAQSNSG NMLKPSRTVG TGCKAKINIT RAPDGRFHLS TVILDHNHAL SPLKPRRFRC 240 NKKLDFRVKR RLELNDPAEI RVNKSSTIPR VTHFDIEKQF QSAYTNSKFK EFQEELTQTM 300 YCDRKLMQKE GAIETYEITE DVLIDEDKGW RKDIVHHVYF SEEEFEVKCS CRRFEFTGIL 360 CRHVLCVLTH KKIKEVPPQY VLDRSKKNVN RKHNFIRCTY GGMEDTPAAE RFDRLCNSFY 420 PVAEIGSMSD DSCNALIEEL RTLKIRFSSN SSSENGKEHV ATREDAHSNG KTTSKNIPSP 480 IAVRCAGCPP SLRKESMLDK LICQASEKKK EAEQKASSTN LNKKRPRKNR KSSVDDILEQ 540 HVMEHSSQQP LCLDGPASSI TSQRTFDLAI TTSNINPSVT ATIPSGGSST VVMPQILGEY 600 TLMPFQVQQG SAIVSSSAEL HFDGTGGLNN TAERS

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence

CSSFSPDRRL LLSLALIAEV DFCGRKTVSP PKPLWSPPIT VSPRGAAHHS ITAGRRRSRR  60
QLGGGVRAGV PDPARGRGAR RRGMDDGIGG VQESSDMSIS SDDDGIKQQR ESNVELAHDR  120
AEAHPDGLLR EPEVGMSFGT ETEVREYYNT YAKAKGFGVT RRSSNRDDNG QLKYLTFSCS  180
RYGKAQSNSG NMLKPSRTVG TGCKAKINIT RAPDGRFHLS TVILDHNHAL SPLKPRRFRC  240
NKKLDFRVKR RLELNDPAEI RVNKSSTIPR VTHFDIEKQF QSAYTNSKFK EFQEELTQTM  300
YCDRKLMQKE GAIETYEITE DVLIDEDKGW RKDIVHHVYF SEEEFEVKCS CRRFEFTGIL  360
CRHVLCVLTH KKIKEVPPQY VLDRSKKNVN RKHNFIRCTY GGMEDTPAAE RFDRLCNSFY  420
PVAEIGSMSD DSCNALIEEL RTLKIRFSSN SSSENGKEHV ATREDAHSNG KTTSKNIPSP  480
IAVRCAGCPP SLRKESMLDK LICQASEKKK EAEQKASSTN LNKKRPRKNR KSSVDDILEQ  540
HVMEHSSQQP LCLDGPASSI TSQRTFDLAI TTSNINPSVT ATIPSGGSST VVMPQILGEY  600
TLMPFQVQQG SAIVSSSAEL HFDGTGGLNN TAERS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	54	61	GRRRSRRQ
2	236	252	RRFRCNKKLDFRVKRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	9e-18	FAR1 family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG004490.11