PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC7AG056000.5
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 230aa    MW: 23883.2 Da    PI: 10.0008
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC7AG056000.5genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.8e-083257227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      kt+lC+ f     Ck G++C+FaHg+
  TRIDC7AG056000.5 32 KTRLCNKFNTAEGCKWGNKCHFAHGE 57
                      9***********************96 PP
2zf-CCCH37.92.9e-12196221127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt+lC++f + G C +GdrC+FaHg+
  TRIDC7AG056000.5 196 FKTKLCDNFNK-GSCTFGDRCHFAHGE 221
                       69*********.*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MTNLGGPAVS APQGRMPMGP GVPDGPPTPS LKTRLCNKFN TAEGCKWGNK CHFAHGEREL  60
GKPMLLNNSM APPMGPRPNG HFQPSPMPGP DMVPPSTFGA SATAKISVDA SLAGAIIGKG  120
GVNTKHISRM TGAKLAIRDN EADPNHKNIE LEGSFDQVNH ASAMVKELIL RIGGNAPPQA  180
KNPGRGPAGG GGGSNFKTKL CDNFNKGSCT FGDRCHFAHG ESELRKSAAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-55C3H family protein