PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC7AG043290.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 107aa MW: 11544.2 Da PI: 8.0863

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7AG043290.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	22	2.8e-07	42	66	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gC l Y rGA +VRC+ C+ V TRIDC7AG043290.2 42 CNGCFSLVLYNRGAANVRCSGCNRV 66 **********************966 PP

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence
HLSLSASAIG ASRLLGSLLG MPRCTSSVNY QTETATMSEL ICNGCFSLVL YNRGAANVRC 60 SGCNRVNSTR SGTFPYIYIY IYIDPAISAT HTHQLCWCCC CNGVAFT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	1e-06	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC7AG043290.2