PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7AG029220.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 398aa MW: 44630.8 Da PI: 8.256

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7AG029220.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.1	1.1e-06	18	41	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ff+ G C G+ C F+H+ TRIDC7AG029220.4 18 KRVLCKFFMH-GACLKGEYCEFSHD 41 89**8888.***********5 PP
2	zf-CCCH	27.9	4.2e-09	49	69	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f++r G C+yG+rC++ H+ TRIDC7AG029220.4 49 VCTFYQR-GSCSYGNRCRYDHV 69 5999999.*************7 PP
3	zf-CCCH	21.7	3.6e-07	180	202	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa++G C+yG+ C+ +Hg TRIDC7AG029220.4 180 MPICS-FAAGGNCPYGEECPHMHG 202 68999.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
VRVPGFGPHP LGPAMSTKRV LCKFFMHGAC LKGEYCEFSH DWSDQANNVC TFYQRGSCSY 60 GNRCRYDHVK VSRNNPVPPL PSSSIATRNS PVRPPPSSST ATHVASTSPQ LLSSGRPLHL 120 GHQTNSSNQR QQISMDKLAV SESKPAWRNE VQLDSVSEDG IGWSSIQTAQ NQTSMKLADM 180 PICSFAAGGN CPYGEECPHM HGDLCAFCGK MCLHPYRPDE RQEHIKLCEK NHKRLEALKR 240 SQEIECSVCL DRVLSKPTAA ERKFGLLSEC DHPFCISCIR NWRGNSPTSG MDVNSALRAC 300 PICRKLSYYV IPSVLWYFSK EEKLEITENY KAKLKSIDCK YFDFGTGTCP FGTSCFYKHA 360 YRDGRLEEVV LRHLDCDDGS TLIAKNIRLS DFLGRLHL

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

VRVPGFGPHP LGPAMSTKRV LCKFFMHGAC LKGEYCEFSH DWSDQANNVC TFYQRGSCSY  60
GNRCRYDHVK VSRNNPVPPL PSSSIATRNS PVRPPPSSST ATHVASTSPQ LLSSGRPLHL  120
GHQTNSSNQR QQISMDKLAV SESKPAWRNE VQLDSVSEDG IGWSSIQTAQ NQTSMKLADM  180
PICSFAAGGN CPYGEECPHM HGDLCAFCGK MCLHPYRPDE RQEHIKLCEK NHKRLEALKR  240
SQEIECSVCL DRVLSKPTAA ERKFGLLSEC DHPFCISCIR NWRGNSPTSG MDVNSALRAC  300
PICRKLSYYV IPSVLWYFSK EEKLEITENY KAKLKSIDCK YFDFGTGTCP FGTSCFYKHA  360
YRDGRLEEVV LRHLDCDDGS TLIAKNIRLS DFLGRLHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-119	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC7AG029220.4