PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC7AG029220.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 430aa MW: 48236 Da PI: 8.2727 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20 | 1.2e-06 | 23 | 46 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ff+ G C G+ C F+H+ TRIDC7AG029220.3 23 KRVLCKFFMH-GACLKGEYCEFSHD 46 89****8888.*************5 PP | |||||||
2 | zf-CCCH | 27.7 | 4.6e-09 | 54 | 74 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f++r G C+yG+rC++ H+ TRIDC7AG029220.3 54 VCTFYQR-GSCSYGNRCRYDHV 74 5999999.*************7 PP | |||||||
3 | zf-CCCH | 21.6 | 4e-07 | 185 | 207 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa++G C+yG+ C+ +Hg TRIDC7AG029220.3 185 MPICS-FAAGGNCPYGEECPHMHG 207 68999.**************9998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence |
EGVPRVRVPG FGPHPLGPAM STKRVLCKFF MHGACLKGEY CEFSHDWSDQ ANNVCTFYQR 60 GSCSYGNRCR YDHVKVSRNN PVPPLPSSSI ATRNSPVRPP PSSSTATHVA STSPQLLSSG 120 RPLHLGHQTN SSNQRQQISM DKLAVSESKP AWRNEVQLDS VSEDGIGWSS IQTAQNQTSM 180 KLADMPICSF AAGGNCPYGE ECPHMHGDLC AFCGKMCLHP YRPDERQEHI KLCEKNHKRL 240 EALKRSQEIE CSVCLDRVLS KPTAAERKFG LLSECDHPFC ISCIRNWRGN SPTSGMDVNS 300 ALRACPICRK LSYYVIPSVL WYFSKEEKLE ITENYKAKLK SIDCKYFDFG TGTCPFGTSC 360 FYKHAYRDGR LEEVVLRHLD CDDGSTLIAK NIRCVLSICF MQSAYFTSPY FSPVLLSHSR 420 LSDFLGRLHL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.1 | 1e-114 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC7AG029220.3 |