PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7AG017190.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

M-type_MADS

Protein Properties

Length: 404aa MW: 44219.8 Da PI: 6.1425

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7AG017190.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	32.2	1.4e-10	46	92	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i+++ r tfskRr g++K LS + a+va+++ ++ k++ + TRIDC7AG017190.1 46 INDDKERDFTFSKRRGGLFKVTADLSAVTSARVAIVVEKENEKMHSF 92 88999****************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MSLVNSFSKS QAFCRSLWFL FLVVSFFVAI GVTMPKKDRR SAITYINDDK ERDFTFSKRR 60 GGLFKVTADL SAVTSARVAI VVEKENEKMH SFGTPSADPI VDAFLAGAPL AIPLADEATT 120 TRIAQLQSEV ARLDMHCMTE FKENQLSIKH MKQILEQHPG TVANLIFSKE EELSLEDLKN 180 LSNEIYRVHE EIGHRLPPLH YGHKAMTSGA SMIQNMLPSS GPPSNHMKIV PSSVHSPWAH 240 HLPQHQMPSS PLPPPPPRQI VAPQFPQVPS MFHPAPSSSV PQIASQLQTT SNQALELPPP 300 LDISVNDYVS SSDPVSPQQN NANPNSTTGY NFVASPLLVN SRGNDLTSND PFGYESWGYG 360 LSDQPFYNGF LEMGAYMGYN GVDVGQSSVG NGGWVDAPPE SSSS

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MSLVNSFSKS QAFCRSLWFL FLVVSFFVAI GVTMPKKDRR SAITYINDDK ERDFTFSKRR  60
GGLFKVTADL SAVTSARVAI VVEKENEKMH SFGTPSADPI VDAFLAGAPL AIPLADEATT  120
TRIAQLQSEV ARLDMHCMTE FKENQLSIKH MKQILEQHPG TVANLIFSKE EELSLEDLKN  180
LSNEIYRVHE EIGHRLPPLH YGHKAMTSGA SMIQNMLPSS GPPSNHMKIV PSSVHSPWAH  240
HLPQHQMPSS PLPPPPPRQI VAPQFPQVPS MFHPAPSSSV PQIASQLQTT SNQALELPPP  300
LDISVNDYVS SSDPVSPQQN NANPNSTTGY NFVASPLLVN SRGNDLTSND PFGYESWGYG  360
LSDQPFYNGF LEMGAYMGYN GVDVGQSSVG NGGWVDAPPE SSSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-11	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	TRIDC7AG017190.1