PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG053820.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

TCP

Protein Properties

Length: 404aa MW: 40647.8 Da PI: 9.468

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG053820.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	134.5	9.5e-42	62	238	2	137
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ TRIDC6BG053820.2 62 VPKRTSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSIPahlrg 154 689****************************************************************999989999999998888899999 PP TCP 89 ..............................kaaksaa.kskksqksaasalnlakesrakarar....are.rtrekmriknkln 137 + ++s++ + + +s + l+++ + +a a a +r+ r++++m+++++++ TRIDC6BG053820.2 155 alpspgvrfgsradawdrvvglgyppegpaS-SSSTPsPLLLNFHSGSVGLDVQPSASAAAAAAaadlSRKrRWEQEMQQQQQQQ 238 99999*********************954.44444477888888887788888555444444356666667777777776654 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
LTMDIAGDAG GGRRPNFPLQ LLEKKEEQPC SSSAAGGTSA GGGNGAAPGG AAGGEMQVRK 60 AVPKRTSTKD RHTKVEGRGR RIRMPALCAA RVFQLTRELG HKTDGETIEW LLQQAEPAVI 120 AATGTGTIPA NFTSLNISLR SSGSSLSIPA HLRGALPSPG VRFGSRADAW DRVVGLGYPP 180 EGPASSSSTP SPLLLNFHSG SVGLDVQPSA SAAAAAAAAD LSRKRRWEQE MQQQQQQQHQ 240 QQQQQYQQQM AGYTQSQMPG TVWMVPSNNT QSGGAPSGGG NGGGGGGSGE SIWTFPQVGS 300 AGAAAAVYRG SVPSGLHFMN FPAPMALLTG QQLGLGPVGG SGGGGGGGDG QMGILAALNA 360 YRTQAAEAAA GQGGGGAGGS SSQQQHGGGG GGGERHESMS TSES

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

LTMDIAGDAG GGRRPNFPLQ LLEKKEEQPC SSSAAGGTSA GGGNGAAPGG AAGGEMQVRK  60
AVPKRTSTKD RHTKVEGRGR RIRMPALCAA RVFQLTRELG HKTDGETIEW LLQQAEPAVI  120
AATGTGTIPA NFTSLNISLR SSGSSLSIPA HLRGALPSPG VRFGSRADAW DRVVGLGYPP  180
EGPASSSSTP SPLLLNFHSG SVGLDVQPSA SAAAAAAAAD LSRKRRWEQE MQQQQQQQHQ  240
QQQQQYQQQM AGYTQSQMPG TVWMVPSNNT QSGGAPSGGG NGGGGGGSGE SIWTFPQVGS  300
AGAAAAVYRG SVPSGLHFMN FPAPMALLTG QQLGLGPVGG SGGGGGGGDG QMGILAALNA  360
YRTQAAEAAA GQGGGGAGGS SSQQQHGGGG GGGERHESMS TSES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	1e-45	TCP family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG053820.2