PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG052290.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CO-like

Protein Properties

Length: 430aa MW: 46803.3 Da PI: 7.0755

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG052290.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27.3	7.3e-09	18	59	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r C+ + + +++++C ++ +lC+ C ++ H+ H+ TRIDC6BG052290.3 18 ARACDGCMRRRARWYCAADDAFLCQACDTSVHSAnplarrHE 59 578*****************************6567777776 PP
2	CCT	66.9	5.4e-23	375	417	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+ TRIDC6BG052290.3 375 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKR 417 9****************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MGGSDQKAAG GAVGGKAARA CDGCMRRRAR WYCAADDAFL CQACDTSVHS ANPLARRHER 60 LRLRATSPLP AEGVAAVKGS PATTSKCLDV APAWPKRKAR TRRPPVKSVG QLLSRRLVVP 120 EVGAGESSTS DERRAPEEEQ LLYRVPVFDP ALAEFCSPPP IDDSRHGEDV EGAVEDTKEH 180 MATPSPVQEL PDCFASFGPT DADLREFAAD MEALLGQGLD DGNELEDSFY MEALGLISPP 240 GEHGGRVKVE ADGSLVSRSN GVLASGHDLK REFNGSPPTL VDDDDSFEHK TSTASNGDAV 300 DDAQFLKRSL DLRLNYEAVM ESWGSSPWTD GRRPSGQLDD LLLHDHAVHG MWTAGGGGRH 360 GDAAWPPRPR TDEWREARVS RYREKRRTRL FAKKIRYEVR KLNAEKRPRM KGRFVKRTGG 420 AAAAAPCAVT

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MGGSDQKAAG GAVGGKAARA CDGCMRRRAR WYCAADDAFL CQACDTSVHS ANPLARRHER  60
LRLRATSPLP AEGVAAVKGS PATTSKCLDV APAWPKRKAR TRRPPVKSVG QLLSRRLVVP  120
EVGAGESSTS DERRAPEEEQ LLYRVPVFDP ALAEFCSPPP IDDSRHGEDV EGAVEDTKEH  180
MATPSPVQEL PDCFASFGPT DADLREFAAD MEALLGQGLD DGNELEDSFY MEALGLISPP  240
GEHGGRVKVE ADGSLVSRSN GVLASGHDLK REFNGSPPTL VDDDDSFEHK TSTASNGDAV  300
DDAQFLKRSL DLRLNYEAVM ESWGSSPWTD GRRPSGQLDD LLLHDHAVHG MWTAGGGGRH  360
GDAAWPPRPR TDEWREARVS RYREKRRTRL FAKKIRYEVR KLNAEKRPRM KGRFVKRTGG  420
AAAAAPCAVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	101	PKRKART
2	386	402	RRTRLFAKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	3e-62	CO-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG052290.3