PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG050500.18

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 173aa MW: 19171.3 Da PI: 8.7578

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG050500.18	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.3	1.3e-08	19	40	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG +C+ +Hg TRIDC6BG050500.18 19 PICS-FAAAGTCPYGKKCPQMHG 40 5788.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence
MSSALTAQNQ APHPLAHLPI CSFAAAGTCP YGKKCPQMHG DLCTTCGKQC LHPYRPSEGG 60 AHIKLCKRNN KRLEALKKSE EIECSVCLDR VLSKPTAAEK RFGLLPECDH AFCITCIRKW 120 RSSSLTSSMD IDSTVKACPI CRKVSYYVIP SATWYSSKEE KQDIIDGYKA KLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	2e-71	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG050500.18