PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG038730.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 535aa MW: 58994.7 Da PI: 4.9384

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG038730.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	97.7	1.7e-30	55	198	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 lp+G++F+P+d el+ e+L++k+ + +e+i++v+ i++++P++Lp ++++ ++++fF++ +++y g+rk+r TRIDC6BG038730.4 55 LPAGVKFDPSDLELL-EHLEQKIGVGGskphmfI--DEFIPTVEndagICYSHPENLP-GTNKDGSSVHFFHSISNAYGCGQRKRRRisnsdr 143 799**********.99876554555332..333444422344******.556678899*************96578888 PP NAM 78 ...tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge..ktdWvmheyrl 128 ++ +W++tgk+k+v++ +g +g kk+Lv+ykg++ g+ ktdWvmh+y+l TRIDC6BG038730.4 144 ttsDEHVRWHKTGKSKPVYD-NGVMKGWKKILVLYKGSQTGGKpdKTDWVMHQYHL 198 65444889********.999*******9987766555*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence
CRSWLITCRG VAKKVRNAHC SNRQISEVGA EACRECPNCK HIIDNSDVAI QWPGLPAGVK 60 FDPSDLELLE HLEQKIGVGG SKPHMFIDEF IPTVENDAGI CYSHPENLPG TNKDGSSVHF 120 FHSISNAYGC GQRKRRRISN SDRTTSDEHV RWHKTGKSKP VYDNGVMKGW KKILVLYKGS 180 QTGGKPDKTD WVMHQYHLGV EENEKVGEFV VSKIFYQLKP RQVDKSEAEM ANEESNAFTS 240 SICPKTPMTK IPPCRPKNSP CETEQNDPGQ EEETVSLAEN AKNPAWCALS SQPVEVALEA 300 GTCSLDKSLH HHEVLDSSDL ENSTFDRPIL SQLMNETLNK NLCALHGLPD LHNVNLGTAP 360 TDLQITKGEN VSLADDAENT ACCSLASQDV EVTSQAGTSL VESLLHHEVS DLHNANLGTP 420 RDLQITKEES VSLVDEAEKW CGLASQAVDV ASHAGTSLDE SLRCHEVLDS FDHEKSLTFD 480 RPIYSQGRDG GLENNLYLLN GLPDLQGVDL GTPIDDLQGL QFYSQESLGS WLDRM

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence

CRSWLITCRG VAKKVRNAHC SNRQISEVGA EACRECPNCK HIIDNSDVAI QWPGLPAGVK  60
FDPSDLELLE HLEQKIGVGG SKPHMFIDEF IPTVENDAGI CYSHPENLPG TNKDGSSVHF  120
FHSISNAYGC GQRKRRRISN SDRTTSDEHV RWHKTGKSKP VYDNGVMKGW KKILVLYKGS  180
QTGGKPDKTD WVMHQYHLGV EENEKVGEFV VSKIFYQLKP RQVDKSEAEM ANEESNAFTS  240
SICPKTPMTK IPPCRPKNSP CETEQNDPGQ EEETVSLAEN AKNPAWCALS SQPVEVALEA  300
GTCSLDKSLH HHEVLDSSDL ENSTFDRPIL SQLMNETLNK NLCALHGLPD LHNVNLGTAP  360
TDLQITKGEN VSLADDAENT ACCSLASQDV EVTSQAGTSL VESLLHHEVS DLHNANLGTP  420
RDLQITKEES VSLVDEAEKW CGLASQAVDV ASHAGTSLDE SLRCHEVLDS FDHEKSLTFD  480
RPIYSQGRDG GLENNLYLLN GLPDLQGVDL GTPIDDLQGL QFYSQESLGS WLDRM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	137	RKRRR
2	133	159	RKRRRISNSDRTTSDEHVRWHKTGKSK
3	134	138	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01600.1	2e-82	NAC family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG038730.4