PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC6BG026790.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CO-like

Protein Properties

Length: 363aa MW: 37841.3 Da PI: 6.6073

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG026790.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.9	8.7e-08	58	103	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e ++ C+ + lC+ C +H+ H++vp+ TRIDC6BG026790.3 58 VWVCEVCELAPAAVTCKADAAALCAACDADIHHAnplarrHERVPV 103 689****************************645599999999986 PP
2	CCT	71.1	2.7e-24	290	333	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+FeK+irY+sRKa+AesRpRvKGrF+k+a TRIDC6BG026790.3 290 REARLMRYREKRKNRRFEKTIRYASRKAYAESRPRVKGRFAKRA 333 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MELQGLGRYW GVGGRRCGSC RGSPAAVHCR TCDGGSGDGA YLCAGCDAGH ARAGHERVWV 60 CEVCELAPAA VTCKADAAAL CAACDADIHH ANPLARRHER VPVQPIGSSS PEGQEQDAFV 120 MSFGGAVDGE NKQDPVGNLN DALEDGAGGK DNVKLDFLFA DMMDPFFGSE LPRFPHADSV 180 VPSGGALELD FGGVAAAAAA AAVSNPSYSS YTAASLGGKG SSSEVGLVPD AICGRGGGII 240 ELDFAQSKAA YLPYTPTPSR SKVSSVDVGS VPERSDSAVV AATPATGEGR EARLMRYREK 300 RKNRRFEKTI RYASRKAYAE SRPRVKGRFA KRADDADAVA VGTITTPRPC VLDFGSYGVV 360 PTF

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MELQGLGRYW GVGGRRCGSC RGSPAAVHCR TCDGGSGDGA YLCAGCDAGH ARAGHERVWV  60
CEVCELAPAA VTCKADAAAL CAACDADIHH ANPLARRHER VPVQPIGSSS PEGQEQDAFV  120
MSFGGAVDGE NKQDPVGNLN DALEDGAGGK DNVKLDFLFA DMMDPFFGSE LPRFPHADSV  180
VPSGGALELD FGGVAAAAAA AAVSNPSYSS YTAASLGGKG SSSEVGLVPD AICGRGGGII  240
ELDFAQSKAA YLPYTPTPSR SKVSSVDVGS VPERSDSAVV AATPATGEGR EARLMRYREK  300
RKNRRFEKTI RYASRKAYAE SRPRVKGRFA KRADDADAVA VGTITTPRPC VLDFGSYGVV  360
PTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	1e-38	CO-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG026790.3