PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6BG024760.16
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 892aa    MW: 98785.5 Da    PI: 6.0411
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6BG024760.16genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.3e-23101202199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F   
  TRIDC6BG024760.16 101 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSIFISAKRLVAGDSVLFI-- 188
                        99*****************************86555544..8************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  TRIDC6BG024760.16 189 WNDNNQLLLGIRRA 202
                        7777778***9997 PP
2Auxin_resp120.71.1e-39227310183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  TRIDC6BG024760.16 227 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 310
                        79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 892 aa     Download sequence    
ACAGPLVSLP AVGSRVLYFP QGHSEQVSAS TNKEMESQIP NYPNLPAQLI CQLHNVTMHA  60
DAETDEVYAQ MTLQPLSPQE LKDPFLPAEL GNASKQPTNY FCKTLTASDT STHGGFSVPR  120
RAAEKVFPPL DFTQQPPAQE LMAKDLHGNE WKFRHIFRGQ PKRHLLTTGW SIFISAKRLV  180
AGDSVLFIWN DNNQLLLGIR RANRSQTVMP SSVLSSDSMH IGLLAAAAHA ASTNSRFTIF  240
YNPRASPSEF VIPLAKYVKA VYHTRISVGM RFRMLFETEE SSVRRYMGTI TGISDLDPAR  300
WPNSHWRSVK VGWDESTAGE RQPRVSLWEI EPLTTYPMYS SPFPMRLKRP WPTGLPSLYG  360
GKEDDLTSSL MWLRDGANPG FQSFNFGGLG MSPWMQPRMD SSLLGLQPDM YQAMSAAAFQ  420
NTTKQVSPTL LQFQQPQNIA GRSALLSSQI LQQVQPQFQE MHHQNINDSA IQGHNQPEYL  480
QQQLQRCQSF NGQKSPLPQQ QESHHQHQQQ QSQCMQTPQH QQMQEQKHSP DFQCVPNGLS  540
VFSQLSSTNQ SPPSTLQTVS AFSQQQNLQD RNISSLSPSN IPSMHDTLRP FPSEAGSNLQ  600
GVPRTTPLPV SDPWSSKRVA MESVIPSSSH VNSSHIQQLD SAPSNIPQSS SLAPLPGREC  660
LVDQDGNSDN QNHLLFGVNI DSQSLLMQGG IPSLQEDNGC IASLQDDNDS STIPYSTCNF  720
LSPSQNDFPL NEALASSGCL DESGYASFSE NSDHVNQSTA AFVKVYKSGT FGRLLDITKF  780
SSYHELRSEV GHLFGLEGQL EDPARSGWQL VFVDREDDIL LVGDDPWQEF VNSVSCIKIL  840
TPQEVQQMGK QGIDLLSSAP ARMLGNSCDN YAGRQESRSL STVIASVGSV EF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0ARF family protein