PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6BG024760.12
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 386aa    MW: 43333.4 Da    PI: 8.8281
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6BG024760.12genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.33.5e-24126227199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F   
  TRIDC6BG024760.12 126 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSIFISAKRLVAGDSVLFI-- 213
                        99*****************************86555544..8************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  TRIDC6BG024760.12 214 WNDNNQLLLGIRRA 227
                        7777778***9997 PP
2Auxin_resp122.43.2e-40252335183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  TRIDC6BG024760.12 252 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 335
                        79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    
MPSSQTIFPF SVSEEHKCLN SELWHACAGP LVSLPAVGSR VLYFPQGHSE QVSASTNKEM  60
ESQIPNYPNL PAQLICQLHN VTMHADAETD EVYAQMTLQP LSPQELKDPF LPAELGNASK  120
QPTNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDFTQQ PPAQELMAKD LHGNEWKFRH  180
IFRGQPKRHL LTTGWSIFIS AKRLVAGDSV LFIWNDNNQL LLGIRRANRS QTVMPSSVLS  240
SDSMHIGLLA AAAHAASTNS RFTIFYNPRA SPSEFVIPLA KYVKAVYHTR ISVGMRFRML  300
FETEESSVRR YMGTITGISD LDPARWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT  360
YPMYSSPFPM RLKRPWPTGL PSLYGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0ARF family protein