PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6BG023520.4
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Whirly
Protein Properties Length: 220aa    MW: 24060.3 Da    PI: 10.1461
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6BG023520.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly183.53.8e-57431802139
            Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94 
                       v+k+kaal++ +++p f++l+sg  +++r+G+++l++ +a+++rkyd+ kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+l
  TRIDC6BG023520.4  43 VFKGKAALSISPILPLFTKLESGGSRVNRNGSVMLTFFPAVGQRKYDYTKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSL 135
                       9******************************************************************************************** PP

            Whirly  95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                       ++ Pl    G+fvn++v n+++k+ne++svPv+kaefav+r++l+
  TRIDC6BG023520.4 136 SITPLGSDNGYFVNITVLNNVQKTNERLSVPVTKAEFAVMRTALS 180
                       ******999*********************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
HKGVTDLKDV LWSSSLTFKH ALSTSAANVD ESTSARKFAS YTVFKGKAAL SISPILPLFT  60
KLESGGSRVN RNGSVMLTFF PAVGQRKYDY TKKQLFALSP TEVGSLISLG PAESCEFFHD  120
PSMKSSHEGQ VKKSLSITPL GSDNGYFVNI TVLNNVQKTN ERLSVPVTKA EFAVMRTALS  180
FALPHIMGWD QALSTHPQST STSASKPRFE RPNPASEWDR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.14e-76Whirly family protein