PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG021410.9

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 614aa MW: 67779.6 Da PI: 5.1705

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG021410.9	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.4	2.8e-09	318	364	6	52
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++ +e +++L + F+++ p +e +e L+++lg++ +++ WF+N R TRIDC6BG021410.9 318 RIPPEAVQVLRKSFAESELPAREVKESLSTELGISFEKIDKWFKNTR 364 667899***************************************99 PP
2	PHD	30.9	6.4e-11	62	115	1	50
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS.TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg.ewlCeeCke 50 +C+ C++ s ++++++C+g Ck ++H kC +++l+++ g wlC+ C + TRIDC6BG021410.9 62 ICSRCKSpeSVPNNKFIFCEGaCKMAYHEKCSEPPLDRSLPTGGpGWLCKFCLC 115 6999987778***966**********966555559*****86 PP

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence
NSREKLKPEK ELQRAKRQII KCKIAIRDII HQLDLYSSSG SMEDSVMPPD ESVKSVNPDN 60 TICSRCKSPE SVPNNKFIFC EGACKMAYHE KCSEPPLDRS LPTGGPGWLC KFCLCKMKIL 120 EAVNAHLGTS LTVMCPSKDI FKEATKEVDS EDGLGEDWLS EYSGDEDYDP EENDFTSSSL 180 DSGEESISDQ SNCSGSPLYS PNDDIPGFIS ADFTDAEGFY HTNSNLGIDS GDDDVAEMLT 240 YQRPKREVGA LTAFHPSQEM FGKLTENEKQ SEDEDWGTNN RRKKRRVHSA GVGVKSAEGL 300 SDVKSNEKAQ PQRRKLFRIP PEAVQVLRKS FAESELPARE VKESLSTELG ISFEKIDKWF 360 KNTRCAALRD RKAEGNSRVA GPSKRSRRSA GKSGSSVKID SVDNSYLIPA SEIISVPTHP 420 QGIPERKPES TSRTVRRLVH DKGAPLCPPA EVKESTSPTT KPGLNPSHVA DRIINTEHRA 480 ASREAPVAFS DDPFFDAILS YPTINTNDRA VSREDPLAFS DDPFLDVMLA NRDIYTEERA 540 VSHEDVKRPS GDQPFLDVIQ NVCGLEHRLQ RLKGDMLSSG AAPGGAGTAE RDLQNQLVVL 600 VPTAELKDKS QPSI

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence

NSREKLKPEK ELQRAKRQII KCKIAIRDII HQLDLYSSSG SMEDSVMPPD ESVKSVNPDN  60
TICSRCKSPE SVPNNKFIFC EGACKMAYHE KCSEPPLDRS LPTGGPGWLC KFCLCKMKIL  120
EAVNAHLGTS LTVMCPSKDI FKEATKEVDS EDGLGEDWLS EYSGDEDYDP EENDFTSSSL  180
DSGEESISDQ SNCSGSPLYS PNDDIPGFIS ADFTDAEGFY HTNSNLGIDS GDDDVAEMLT  240
YQRPKREVGA LTAFHPSQEM FGKLTENEKQ SEDEDWGTNN RRKKRRVHSA GVGVKSAEGL  300
SDVKSNEKAQ PQRRKLFRIP PEAVQVLRKS FAESELPARE VKESLSTELG ISFEKIDKWF  360
KNTRCAALRD RKAEGNSRVA GPSKRSRRSA GKSGSSVKID SVDNSYLIPA SEIISVPTHP  420
QGIPERKPES TSRTVRRLVH DKGAPLCPPA EVKESTSPTT KPGLNPSHVA DRIINTEHRA  480
ASREAPVAFS DDPFFDAILS YPTINTNDRA VSREDPLAFS DDPFLDVMLA NRDIYTEERA  540
VSHEDVKRPS GDQPFLDVIQ NVCGLEHRLQ RLKGDMLSSG AAPGGAGTAE RDLQNQLVVL  600
VPTAELKDKS QPSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	1e-57	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG021410.9