PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG021410.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 764aa MW: 85196.3 Da PI: 8.168

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG021410.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28	3.7e-09	468	514	6	52
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++ +e +++L + F+++ p +e +e L+++lg++ +++ WF+N R TRIDC6BG021410.2 468 RIPPEAVQVLRKSFAESELPAREVKESLSTELGISFEKIDKWFKNTR 514 667899***************************************99 PP
2	PHD	30.5	8.4e-11	204	257	1	50
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS.TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg.ewlCeeCke 50 +C+ C++ s ++++++C+g Ck ++H kC +++l+++ g wlC+ C + TRIDC6BG021410.2 204 ICSRCKSpeSVPNNKFIFCEGaCKMAYHEKCSEPPLDRSLPTGGpGWLCKFCLC 257 6999987778***966**********966555559*****86 PP

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence
MDNSDKKSVC SIPRRSSERR KQSSSELVSS AKRPTRHNTS SSYKPDHCSP PKRTVRTVRN 60 VNLAKYIKNK YYRSPLSKRQ SSNVATGKSA TGPVRRRNRK RRRHNTDCDE ATRMERRARY 120 LLVKIKSEQN LIDAYSGECA FPNSREKLKP EKELQRAKRQ IIKCKIAIRD IIHQLDLYSS 180 SGSMEDSVMP PDESVKSVNP DNTICSRCKS PESVPNNKFI FCEGACKMAY HEKCSEPPLD 240 RSLPTGGPGW LCKFCLCKMK ILEAVNAHLG TSLTVMCPSK DIFKEATKEV DSEDGLGEDW 300 LSEYSGDEDY DPEENDFTSS SLDSGEESIS DQSNCSGSPL YSPNDDIPGF ISADFTDAEG 360 FYHTNSNLGI DSGDDDVAEM LTYQRPKREV DYKRLNEVGA LTAFHPSQEM FGKLTENEKQ 420 SEDEDWGTNN RRKKRRVHSA GVGVKSAEGL SDVKSNEKAQ PQRRKLFRIP PEAVQVLRKS 480 FAESELPARE VKESLSTELG ISFEKIDKWF KNTRCAALRD RKAEGNSRVA GPSKRSRRSA 540 GKSGSSVKID SVDNSYLIPA SEIISVPTHP QGIPERKPES TSRTVRRLVH DKGAPLCPPA 600 EVKESTSPTT KPGLNPSHVA DRIINTEHRA ASREAPVAFS DDPFFDAILS YPTINTNDRA 660 VSREDPLAFS DDPFLDVMLA NRDIYTEERA VSHEDVKRPS GDQPFLDVIQ NVCGLEHRLQ 720 RLKGDMLSSG AAPGGAGTAE RDLQNQLVVL VPTAELKDKS QPSI

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence

MDNSDKKSVC SIPRRSSERR KQSSSELVSS AKRPTRHNTS SSYKPDHCSP PKRTVRTVRN  60
VNLAKYIKNK YYRSPLSKRQ SSNVATGKSA TGPVRRRNRK RRRHNTDCDE ATRMERRARY  120
LLVKIKSEQN LIDAYSGECA FPNSREKLKP EKELQRAKRQ IIKCKIAIRD IIHQLDLYSS  180
SGSMEDSVMP PDESVKSVNP DNTICSRCKS PESVPNNKFI FCEGACKMAY HEKCSEPPLD  240
RSLPTGGPGW LCKFCLCKMK ILEAVNAHLG TSLTVMCPSK DIFKEATKEV DSEDGLGEDW  300
LSEYSGDEDY DPEENDFTSS SLDSGEESIS DQSNCSGSPL YSPNDDIPGF ISADFTDAEG  360
FYHTNSNLGI DSGDDDVAEM LTYQRPKREV DYKRLNEVGA LTAFHPSQEM FGKLTENEKQ  420
SEDEDWGTNN RRKKRRVHSA GVGVKSAEGL SDVKSNEKAQ PQRRKLFRIP PEAVQVLRKS  480
FAESELPARE VKESLSTELG ISFEKIDKWF KNTRCAALRD RKAEGNSRVA GPSKRSRRSA  540
GKSGSSVKID SVDNSYLIPA SEIISVPTHP QGIPERKPES TSRTVRRLVH DKGAPLCPPA  600
EVKESTSPTT KPGLNPSHVA DRIINTEHRA ASREAPVAFS DDPFFDAILS YPTINTNDRA  660
VSREDPLAFS DDPFLDVMLA NRDIYTEERA VSHEDVKRPS GDQPFLDVIQ NVCGLEHRLQ  720
RLKGDMLSSG AAPGGAGTAE RDLQNQLVVL VPTAELKDKS QPSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	103	RKRRR
2	99	126	RKRRRHNTDCDEATRMERRARYLLVKIK
3	100	127	RKRRRHNTDCDEATRMERRARYLLVKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	2e-71	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG021410.2