PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG021410.12

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 611aa MW: 67586.5 Da PI: 5.1135

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG021410.12	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.4	2.8e-09	315	361	6	52
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++ +e +++L + F+++ p +e +e L+++lg++ +++ WF+N R TRIDC6BG021410.12 315 RIPPEAVQVLRKSFAESELPAREVKESLSTELGISFEKIDKWFKNTR 361 667899***************************************99 PP
2	PHD	30.9	6.3e-11	51	104	1	50
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS.TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg.ewlCeeCke 50 +C+ C++ s ++++++C+g Ck ++H kC +++l+++ g wlC+ C + TRIDC6BG021410.12 51 ICSRCKSpeSVPNNKFIFCEGaCKMAYHEKCSEPPLDRSLPTGGpGWLCKFCLC 104 6999987778***966**********966555559*****86 PP

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence
EKLKPEKELQ RAKRQIIKCK IAIRDIIHQL DLYSSSGSME DSVMPPDEST ICSRCKSPES 60 VPNNKFIFCE GACKMAYHEK CSEPPLDRSL PTGGPGWLCK FCLCKMKILE AVNAHLGTSL 120 TVMCPSKDIF KEATKEVDSE DGLGEDWLSE YSGDEDYDPE ENDFTSSSLD SGEESISDQS 180 NCSGSPLYSP NDDIPGFISA DFTDAEGFYH TNSNLGIDSG DDDVAEMLTY QRPKREVDYK 240 RLNEVGALTA FHPSQEMFGK LTENEKQSED EDWGTNNRRK KRRVHSAGVG VKSAEGLSDV 300 KSNEKAQPQR RKLFRIPPEA VQVLRKSFAE SELPAREVKE SLSTELGISF EKIDKWFKNT 360 RCAALRDRKA EGNSRVAGPS KRSRRSAGKS GSSVKIDSVD NSYLIPASEI ISVPTHPQGI 420 PERKPESTSR TVRRLVHDKG APLCPPAEVK ESTSPTTKPG LNPSHVADRI INTEHRAASR 480 EAPVAFSDDP FFDAILSYPT INTNDRAVSR EDPLAFSDDP FLDVMLANRD IYTEERAVSH 540 EDVKRPSGDQ PFLDVIQNVC GLEHRLQRLK GDMLSSGAAP GGAGTAERDL QNQLVVLVPT 600 AELKDKSQPS I

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence

EKLKPEKELQ RAKRQIIKCK IAIRDIIHQL DLYSSSGSME DSVMPPDEST ICSRCKSPES  60
VPNNKFIFCE GACKMAYHEK CSEPPLDRSL PTGGPGWLCK FCLCKMKILE AVNAHLGTSL  120
TVMCPSKDIF KEATKEVDSE DGLGEDWLSE YSGDEDYDPE ENDFTSSSLD SGEESISDQS  180
NCSGSPLYSP NDDIPGFISA DFTDAEGFYH TNSNLGIDSG DDDVAEMLTY QRPKREVDYK  240
RLNEVGALTA FHPSQEMFGK LTENEKQSED EDWGTNNRRK KRRVHSAGVG VKSAEGLSDV  300
KSNEKAQPQR RKLFRIPPEA VQVLRKSFAE SELPAREVKE SLSTELGISF EKIDKWFKNT  360
RCAALRDRKA EGNSRVAGPS KRSRRSAGKS GSSVKIDSVD NSYLIPASEI ISVPTHPQGI  420
PERKPESTSR TVRRLVHDKG APLCPPAEVK ESTSPTTKPG LNPSHVADRI INTEHRAASR  480
EAPVAFSDDP FFDAILSYPT INTNDRAVSR EDPLAFSDDP FLDVMLANRD IYTEERAVSH  540
EDVKRPSGDQ PFLDVIQNVC GLEHRLQRLK GDMLSSGAAP GGAGTAERDL QNQLVVLVPT  600
AELKDKSQPS I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	1e-55	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG021410.12