PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG020370.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 1016aa MW: 113702 Da PI: 6.5749

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG020370.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.5	2.3e-22	73	174	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F ++ TRIDC6BG020370.4 73 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIFV--RD 162 99****************************9999986.*********************************************..56 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++++l+++++r+ TRIDC6BG020370.4 163 EKQQLLLGIRRA 174 88889**997 PP
2	Auxin_resp	114.2	1.2e-37	199	282	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+ e+e+ +rr++Gt++g+sdldpvrW+nS+WrsL+ TRIDC6BG020370.4 199 AAHASANTSPFTIFYNPRASPTEFVIPFAKYQKAMYsNQISLGMRFRMMCEMEELGTRRYMGTITGISDLDPVRWKNSQWRSLQ 282 799******************************989******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1016 aa Download sequence
ASMQKDVEAH VPSYPNLPSK LICLLHSVTL QADPDTDEVY AQMTLQPVNT YAKEALQLSE 60 LALRQARPQM EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP SLDFSLQPPC QELQARDIHD 120 NVWTFRHIFR GQPKRHLLTT GWSLFVSGKK LFAGDSVIFV RDEKQQLLLG IRRANRQPTN 180 ISSSVLSSDS MHIGVLAAAA HASANTSPFT IFYNPRASPT EFVIPFAKYQ KAMYSNQISL 240 GMRFRMMCEM EELGTRRYMG TITGISDLDP VRWKNSQWRS LQVGWDESAA GERRNRVSIW 300 EIEPLAAPFF ICPQPFFGVK RPRQLDDESL EMESLLKRAM PWLGEEVCIK DPQTQSVTMP 360 GLSLVQWMNM NRQQSSSLAS TAMQSEYYRS ASNPAMQNIG AADLARQLYM QNHLLQQNSM 420 QFNPPKLHQQ MKPINDLSNA ALPLNQLGAI RNHQDQKQDQ QRQQQSSIQA IPLSQAHPQT 480 NNVQAQVILQ NQMQQQQQQK QPPPSPTQNQ HGSSGQHLLQ SHQLQDQNLQ MQQQQLLLHQ 540 QLQQQQQQQL NKLPGQLANL ASQQTQLSEQ ELHLQLLQKL QQQSLMSQSA VTLSRLPIIQ 600 EQQNFLVDMQ QQLSNSHSLA QQQVMPQQDC RTSSLQTTQL PPPIQQEQQQ QKPSQKQVAP 660 TYVSEAAFAQ ISSTSVIPKT GNTMIVPGAA QSAVTEEIPS CSTSPSTANG NHLAQPTIGR 720 NDHCKVSTEK VPHSIAQMSI LTPIEAVSVT PVTTKELPKL NNGVKSSAIT SKLPNVVSGL 780 QNFMNNALPT DNLETASSAT SLWPSQTDGL LHQGFATSNF NQHQMFKDEL PDVEIQGVDP 840 SNSALFGMNN DGPLGFPMET EGLLENALDS VKYQNHFSTD DENNYQMQKD ARQEISTSMV 900 SQSFGQSDMA FNSIDSAIND GALMNRSSWP PAAPPQRMRT FTKVYKRGAV GRSIDIGRFS 960 GYGELNQALA RMFGIEGQLE DRQRIGWKLV YTDHEDDVLL LGDDPWEGVC ELREVH

Sequence ? help Back to Top

Protein Sequence Length: 1016 aa Download sequence

ASMQKDVEAH VPSYPNLPSK LICLLHSVTL QADPDTDEVY AQMTLQPVNT YAKEALQLSE  60
LALRQARPQM EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP SLDFSLQPPC QELQARDIHD  120
NVWTFRHIFR GQPKRHLLTT GWSLFVSGKK LFAGDSVIFV RDEKQQLLLG IRRANRQPTN  180
ISSSVLSSDS MHIGVLAAAA HASANTSPFT IFYNPRASPT EFVIPFAKYQ KAMYSNQISL  240
GMRFRMMCEM EELGTRRYMG TITGISDLDP VRWKNSQWRS LQVGWDESAA GERRNRVSIW  300
EIEPLAAPFF ICPQPFFGVK RPRQLDDESL EMESLLKRAM PWLGEEVCIK DPQTQSVTMP  360
GLSLVQWMNM NRQQSSSLAS TAMQSEYYRS ASNPAMQNIG AADLARQLYM QNHLLQQNSM  420
QFNPPKLHQQ MKPINDLSNA ALPLNQLGAI RNHQDQKQDQ QRQQQSSIQA IPLSQAHPQT  480
NNVQAQVILQ NQMQQQQQQK QPPPSPTQNQ HGSSGQHLLQ SHQLQDQNLQ MQQQQLLLHQ  540
QLQQQQQQQL NKLPGQLANL ASQQTQLSEQ ELHLQLLQKL QQQSLMSQSA VTLSRLPIIQ  600
EQQNFLVDMQ QQLSNSHSLA QQQVMPQQDC RTSSLQTTQL PPPIQQEQQQ QKPSQKQVAP  660
TYVSEAAFAQ ISSTSVIPKT GNTMIVPGAA QSAVTEEIPS CSTSPSTANG NHLAQPTIGR  720
NDHCKVSTEK VPHSIAQMSI LTPIEAVSVT PVTTKELPKL NNGVKSSAIT SKLPNVVSGL  780
QNFMNNALPT DNLETASSAT SLWPSQTDGL LHQGFATSNF NQHQMFKDEL PDVEIQGVDP  840
SNSALFGMNN DGPLGFPMET EGLLENALDS VKYQNHFSTD DENNYQMQKD ARQEISTSMV  900
SQSFGQSDMA FNSIDSAIND GALMNRSSWP PAAPPQRMRT FTKVYKRGAV GRSIDIGRFS  960
GYGELNQALA RMFGIEGQLE DRQRIGWKLV YTDHEDDVLL LGDDPWEGVC ELREVH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20730.2	1e-177	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG020370.4