PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG001980.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARR-B

Protein Properties

Length: 485aa MW: 52338.6 Da PI: 7.0227

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG001980.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	51.6	2e-16	204	260	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkg..LtlehvkSHLQkYRl 55 k++++Wt e+ e Fv+av+qL +e tP +i+e+++++g Lt ++v SHLQkYR TRIDC6BG001980.1 204 KNKVEWTREMRELFVNAVTQLKTTEDDTPNNIREFLEIDGiyLTTAQVSSHLQKYRK 260 6899*********************************9777***********5 PP
2	Response_reg	42.6	3.2e-15	32	140	1	108
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT..SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg..mdGlellkeireeepklpiivvtahgeeedalea 89 vl vdD+p+ ++ l+q+l++ gy ev++ ++ ea++ ++++ D i++ ++ g mdGl llk++ ++ + ++v+++ +++e++ + TRIDC6BG001980.1 32 VLAVDDDPVCLHTLTQMLRRGGY-EVTAKPSPAEAVREVEKNPdgTDFIMTVVQTRGrgMDGLGLLKRLGKRF--PVVLVFSGDDSMETRRRG 121 799******************.77777777777777766666999999999998888******6666..5899999******* PP HHTTESEEEESS--HHHHH CS Response_reg 90 lkaGakdflsKpfdpeelv 108 + Ga l+Kp ++++ TRIDC6BG001980.1 122 NEGGACYLLEKPLRDAQIY 140 ***********999985 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
HEFDARARAA AMANGDQDMA TDELMGTEGL KVLAVDDDPV CLHTLTQMLR RGGYEVTAKP 60 SPAEAVREVE KNPDGTDFIM TVVQTRGRGM DGLGLLKRLG KRFPVVLVFS GDDSMETRRR 120 GNEGGACYLL EKPLRDAQIY FIWQHVVRWR RNAAAAAAMA NADPRHSQGV HLDDTPRNRG 180 QGVNDSNKGK GSSEGGLQLG TTKKNKVEWT REMRELFVNA VTQLKTTEDD TPNNIREFLE 240 IDGIYLTTAQ VSSHLQKYRK DCRTGGLSTM PSSRPSHSNS TSKNYSESQE SEGSYRFHMR 300 SQGARDINQT SWLSGGASQV DYGVLGNGNQ ATNLGSGAGY GHGYHHGNGI GDINGYDHHY 360 GTVGFNDYAQ RYGNGNNKSY GYPHGNSNYN NYGNGNGGCG GVITSGSMAS ASLPSNLAPP 420 VQHGMRGDAS AGQASAVQPH KLDRVCLNWG NTSSETVGTS GGGGVVTDMT VHGITMEELE 480 NLTKH

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

HEFDARARAA AMANGDQDMA TDELMGTEGL KVLAVDDDPV CLHTLTQMLR RGGYEVTAKP  60
SPAEAVREVE KNPDGTDFIM TVVQTRGRGM DGLGLLKRLG KRFPVVLVFS GDDSMETRRR  120
GNEGGACYLL EKPLRDAQIY FIWQHVVRWR RNAAAAAAMA NADPRHSQGV HLDDTPRNRG  180
QGVNDSNKGK GSSEGGLQLG TTKKNKVEWT REMRELFVNA VTQLKTTEDD TPNNIREFLE  240
IDGIYLTTAQ VSSHLQKYRK DCRTGGLSTM PSSRPSHSNS TSKNYSESQE SEGSYRFHMR  300
SQGARDINQT SWLSGGASQV DYGVLGNGNQ ATNLGSGAGY GHGYHHGNGI GDINGYDHHY  360
GTVGFNDYAQ RYGNGNNKSY GYPHGNSNYN NYGNGNGGCG GVITSGSMAS ASLPSNLAPP  420
VQHGMRGDAS AGQASAVQPH KLDRVCLNWG NTSSETVGTS GGGGVVTDMT VHGITMEELE  480
NLTKH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.1	5e-25	ARR-B family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG001980.1