PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC6AG061300.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 625aa MW: 69304.5 Da PI: 5.4724

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG061300.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21	6.1e-07	86	108	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ++++ G C G+ C+F+Hgp TRIDC6AG061300.2 86 VPCYYYQK-GMCAKGNLCTFSHGP 108 79****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 625 aa Download sequence
LASPLTCNKQ GSECEYRHSD GARVNPRDCW YWFNGNCANA KCSFRHPPLD DLLGASATPR 60 APQQPALQVP VPAQAVPPNG TAKPVVPCYY YQKGMCAKGN LCTFSHGPQF AGNHALQPHL 120 QLKNSNSWTK PTNSPQQSTI PAVHGELKVG AQNGRPAQKQ NPTSRAYHSP GIYQNQNKPY 180 VLSGAAKSYQ PQRSVEAESA ENVMETGEFV REPSAGSSVV AGSVEDDAER SFKEGHTSSY 240 RRASGEQNSG VRRQAHGGYE LERSSHRSSS DRLVSERRLT QRESMPVTAE SSDLRHRLLK 300 QRRLNDSRQS TQVPDRRDRR YPEDERDSHH RRRGEERAAH DGLSRSRLQG RIKLPGETSL 360 DRLGPHPHLE KERGHRDRLS PPKQTDLRAK LHDRLKARSN EEVPGNLKSS VVKASSGEDA 420 GVVNFSGPKS LAELRAKKAA YRSGENTVKN AGRVARPARM TSEIVAKRDS PDLVPFDGPK 480 PLSVILKRKR EAASADSGSM QEEQVAGQEE QSLNNSRILD NDRVEANTED IEEEEEFHPE 540 DDVMYDDDGL SPADDNTAEA AADVGKEELE EGQQEDLETA AEEEYDYQAA DDANAEGEND 600 YQEYEDDDDL EDDDDFARKV GVLIS

Sequence ? help Back to Top

Protein Sequence Length: 625 aa Download sequence

LASPLTCNKQ GSECEYRHSD GARVNPRDCW YWFNGNCANA KCSFRHPPLD DLLGASATPR  60
APQQPALQVP VPAQAVPPNG TAKPVVPCYY YQKGMCAKGN LCTFSHGPQF AGNHALQPHL  120
QLKNSNSWTK PTNSPQQSTI PAVHGELKVG AQNGRPAQKQ NPTSRAYHSP GIYQNQNKPY  180
VLSGAAKSYQ PQRSVEAESA ENVMETGEFV REPSAGSSVV AGSVEDDAER SFKEGHTSSY  240
RRASGEQNSG VRRQAHGGYE LERSSHRSSS DRLVSERRLT QRESMPVTAE SSDLRHRLLK  300
QRRLNDSRQS TQVPDRRDRR YPEDERDSHH RRRGEERAAH DGLSRSRLQG RIKLPGETSL  360
DRLGPHPHLE KERGHRDRLS PPKQTDLRAK LHDRLKARSN EEVPGNLKSS VVKASSGEDA  420
GVVNFSGPKS LAELRAKKAA YRSGENTVKN AGRVARPARM TSEIVAKRDS PDLVPFDGPK  480
PLSVILKRKR EAASADSGSM QEEQVAGQEE QSLNNSRILD NDRVEANTED IEEEEEFHPE  540
DDVMYDDDGL SPADDNTAEA AADVGKEELE EGQQEDLETA AEEEYDYQAA DDANAEGEND  600
YQEYEDDDDL EDDDDFARKV GVLIS

Link Out ? help Back to Top
Ensembl	TRIDC6AG061300.2