PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG061300.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 629aa MW: 69820.1 Da PI: 5.3917

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG061300.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.9	6.1e-07	90	112	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ++++ G C G+ C+F+Hgp TRIDC6AG061300.1 90 VPCYYYQK-GMCAKGNLCTFSHGP 112 79****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence
DCVYYLASPL TCNKGSECEY RHSDGARVNP RDCWYWFNGN CANAKCSFRH PPLDDLLGAS 60 ATPRAPQQPA LQVPVPAQAV PPNGTAKPVV PCYYYQKGMC AKGNLCTFSH GPQFAGNHAL 120 QPHLQLKNSN SWTKPTNSPQ QSTIPAVHGE LKVGAQNGRP AQKQNPTSRA YHSPGIYQNQ 180 NKPYVLSGAA KSYQPQRSVE AESAENVMET GEFVREPSAG SSVVAGSVED DAERSFKEGH 240 TSSYRRASGE QNSGVRRQAH GGYELERSSH RSSSDRLVSE RRLTQRESMP VTAESSDLRH 300 RLLKQRRLND SRQSTQVPDR RDRRYPEDER DSHHRRRGEE RAAHDGLSRS RLQGRIKLPG 360 ETSLDRLGPH PHLEKERGHR DRLSPPKQTD LRAKLHDRLK ARSNEEVPGN LKSSVVKASS 420 GEDAGVVNFS GPKSLAELRA KKAAYRSGEN TVKNAGRVAR PARMTSEIVA KRDSPDLVPF 480 DGPKPLSVIL KRKREAASAD SGSMQEEQVA GQEEQSLNNS RILDNDRVEA NTEDIEEEEE 540 FHPEDDVMYD DDGLSPADDN TAEAAADVGK EELEEGQQED LETAAEEEYD YQAADDANAE 600 GENDYQEYED DDDLEDDDDF ARKVGVLIS

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence

DCVYYLASPL TCNKGSECEY RHSDGARVNP RDCWYWFNGN CANAKCSFRH PPLDDLLGAS  60
ATPRAPQQPA LQVPVPAQAV PPNGTAKPVV PCYYYQKGMC AKGNLCTFSH GPQFAGNHAL  120
QPHLQLKNSN SWTKPTNSPQ QSTIPAVHGE LKVGAQNGRP AQKQNPTSRA YHSPGIYQNQ  180
NKPYVLSGAA KSYQPQRSVE AESAENVMET GEFVREPSAG SSVVAGSVED DAERSFKEGH  240
TSSYRRASGE QNSGVRRQAH GGYELERSSH RSSSDRLVSE RRLTQRESMP VTAESSDLRH  300
RLLKQRRLND SRQSTQVPDR RDRRYPEDER DSHHRRRGEE RAAHDGLSRS RLQGRIKLPG  360
ETSLDRLGPH PHLEKERGHR DRLSPPKQTD LRAKLHDRLK ARSNEEVPGN LKSSVVKASS  420
GEDAGVVNFS GPKSLAELRA KKAAYRSGEN TVKNAGRVAR PARMTSEIVA KRDSPDLVPF  480
DGPKPLSVIL KRKREAASAD SGSMQEEQVA GQEEQSLNNS RILDNDRVEA NTEDIEEEEE  540
FHPEDDVMYD DDGLSPADDN TAEAAADVGK EELEEGQQED LETAAEEEYD YQAADDANAE  600
GENDYQEYED DDDLEDDDDF ARKVGVLIS

Link Out ? help Back to Top
Ensembl	TRIDC6AG061300.1