PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC6AG043790.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 390aa MW: 42752.6 Da PI: 4.6966 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.6 | 9.1e-07 | 4 | 35 | 5 | 36 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ ++e++ +++C+++ lC +C + H+ TRIDC6AG043790.5 4 LCDFCGEQRPTIYCRSDAASLCLSCDRNVHSA 35 6***************************9954 PP | |||||||
2 | zf-B_box | 23.5 | 1.2e-07 | 47 | 78 | 5 | 36 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+++ ++++ C + ++ lC++C ++H TRIDC6AG043790.5 47 LCDRCASQPAAVRCLEENTSLCQNCDWSGHAA 78 7*****************************55 PP | |||||||
3 | CCT | 62.1 | 1.8e-21 | 333 | 376 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R al+RY eK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ TRIDC6AG043790.5 333 RGSALSRYMEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 376 6789*************************************985 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 390 aa Download sequence |
MGALCDFCGE QRPTIYCRSD AASLCLSCDR NVHSANTLSQ RHMRTLLCDR CASQPAAVRC 60 LEENTSLCQN CDWSGHAATS MAAGHLRQTI NCYSGCPSSE VLARIWSFDF DAPSAAAEPN 120 CEEGISMMSI NDSGVSNHCG VQQDCSLLDI ANSSLMSDPP TSEKLKSEDE MNLQPLPTHQ 180 PAQSVSMAPK VPSVTDDDMF NDGRIYENFC VDDNDLTFEN YEELFGTPHV QTEQLFDDAG 240 IDSFFELKEM PAADCDQQLN PMRPKCSNAV SADSSLCVPA RQAISTISLS FSGLTGESNA 300 GDHQDCEVSP LLLMGEQPWL PPGSEGSSAG GSRGSALSRY MEKKKRRKFD KKIRYASRKA 360 RADVRKRVKG RFVKAGEAYD YDPLSDTRSY |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 343 | 347 | KKKRR |
2 | 343 | 348 | KKKRRK |
3 | 343 | 369 | KKKRRKFDKKIRYASRKARADVRKRVK |
4 | 344 | 370 | KKKRRKFDKKIRYASRKARADVRKRVK |
5 | 344 | 348 | KKRRK |
6 | 345 | 371 | KKKRRKFDKKIRYASRKARADVRKRVK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48250.1 | 8e-92 | CO-like family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC6AG043790.5 |