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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC6AG040550.2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | bHLH | ||||||||
| Protein Properties | Length: 337aa MW: 35983.6 Da PI: 6.7821 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 38 | 3e-12 | 90 | 141 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i+ A++++k+L+
TRIDC6AG040550.2 90 QRMTHIAVERNRRRQMNEYLVVLRSLMPVS---YVQRGDQASIVGGAIDFVKELE 141
79****************************...9******************995 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 337 aa Download sequence |
AMALVDALCA SSVDNAALVY STFNAAGFLF DNAAGFYDGA GIAGAPAHEP QAADVAAPAE 60 KQATSSPAPP RRKRRRRARS CKSREETECQ RMTHIAVERN RRRQMNEYLV VLRSLMPVSY 120 VQRGDQASIV GGAIDFVKEL EQQLQSLEAQ KRALAHQQQQ HKAGRDAAPL PARASTSGGI 180 GNACVESTSN CSSSVTEADG APDAPPFAGF FTYPQYVWRQ SPRDATTLSA DESRAGVADV 240 EVNLVETHAS LRVMAPRRPG QLLRMVAGLQ ALRLAVLHLN VTALDALVLY SLSLKVEEGC 300 GLTTADDIAA AVHHVLCFIH AEAEAEAASQ QLLAPAQ |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 71 | 77 | RRKRRRR |
| 2 | 72 | 76 | RKRRR |
| 3 | 72 | 79 | RKRRRRAR |
| 4 | 91 | 102 | RMTHIAVERNRR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT1G72210.1 | 8e-58 | bHLH family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC6AG040550.2 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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