PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC6AG039630.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 432aa MW: 46589.9 Da PI: 7.9197

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG039630.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1.1e-06	110	130	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C+ff++ G C yG++C++ H TRIDC6AG039630.3 110 RPCKFFLA-GDCTYGEKCRYPH 130 79****.********965 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MDFEADGRFG NKRVHNRLGP APGAASSSSS TKVCIHWRAG RCNRFPCPFL HSELPEAATT 60 KRPNQRDGPG GHVWRNPNSG GGGRGGGGFN KWGRGPGGAD GGVRHKVPDR PCKFFLAGDC 120 TYGEKCRYPH TYCMSNSITL LTPLQGHEKV VTGIALPAGS DKLYSGSKDG TVRLWDCQTG 180 QCAGVLPVGG EVGCMISEGP WLFVGIPDAV KVWNMQTQAE MNLTGPTGQV YALAIGNELL 240 FAATQDGRIL AWRFSTVTNC FEPAASLTGH QLAVVSLIVG GMRLYSGSMD KTIRVWDLAT 300 LQCIQTLSDH TNVVMSLLCW DQFLLSCSLD QTIKVRAATE SGNLEVTYTH KEENGALALT 360 GMPDAQSKPV LVCSLNDNTV RLYDLPSFSD RGRIFSKQEI RAIQTGPGGL FFTGDGTGEL 420 KVWQWIIDAS QT

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MDFEADGRFG NKRVHNRLGP APGAASSSSS TKVCIHWRAG RCNRFPCPFL HSELPEAATT  60
KRPNQRDGPG GHVWRNPNSG GGGRGGGGFN KWGRGPGGAD GGVRHKVPDR PCKFFLAGDC  120
TYGEKCRYPH TYCMSNSITL LTPLQGHEKV VTGIALPAGS DKLYSGSKDG TVRLWDCQTG  180
QCAGVLPVGG EVGCMISEGP WLFVGIPDAV KVWNMQTQAE MNLTGPTGQV YALAIGNELL  240
FAATQDGRIL AWRFSTVTNC FEPAASLTGH QLAVVSLIVG GMRLYSGSMD KTIRVWDLAT  300
LQCIQTLSDH TNVVMSLLCW DQFLLSCSLD QTIKVRAATE SGNLEVTYTH KEENGALALT  360
GMPDAQSKPV LVCSLNDNTV RLYDLPSFSD RGRIFSKQEI RAIQTGPGGL FFTGDGTGEL  420
KVWQWIIDAS QT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	88	GGGGRGGGG
2	81	89	GGGGRGGGG
3	82	90	GGGGRGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51980.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG039630.3