PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG038320.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 585aa MW: 61796.2 Da PI: 6.5045

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG038320.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.6e-05	110	127	2	19
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cgk F+++ +L H TRIDC6AG038320.2 110 VCENCGKEFTSWKSLLDH 127 6***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence
MAMVMENQQP VAQMQLIPAP PRPPPPPPPA PQAYKHHCKV CKKGFMCGRA LGGHMRAHGI 60 ADDALAAEDA FDDDGGGVGE SSEAGSPSPT TAKRMYGLRV NPGRLRNCRV CENCGKEFTS 120 WKSLLDHGRC SFDEDDDLDG SLRSSSPPHN NADEGLDEDD EEEGDLALAS GWSKGKRSRR 180 AKVMIAGSSA ISEVQQPAPS SEEEDLANCL VMLSSSRVTQ PTVHVDADQE SSASASKDEE 240 RNKLLVPQPL SIIPPMTAQF KFSAPQVVVA QHVPTVPRGL FECKACKKVF TSHQALGGHR 300 ASHKKVKGCF AAKLESSRNE STHQQAMASA ALHDNTRAIP EAVGDTSTAE GKSGNLDAGK 360 ATSVGAGEFV VPAATTEMAI MPIADAAPVA AAFSPFKKKG KVHECSICHR VFTSGQALGG 420 HKRCHWLTSS ATDPAKLQPV VPDHLMAAMC HHLTLGRPMF DAADQRILDL NVPTNPSAEA 480 VATRQAAELN DIPLCLNAPA SMYVQSWTGH SNASHVNKTG TSSRNDAAAG GGAATEDEAD 540 STSAKRAKVS DLKDMKVAGE SLSWLQVGIG ISSSENNEKS AQEGA

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence

MAMVMENQQP VAQMQLIPAP PRPPPPPPPA PQAYKHHCKV CKKGFMCGRA LGGHMRAHGI  60
ADDALAAEDA FDDDGGGVGE SSEAGSPSPT TAKRMYGLRV NPGRLRNCRV CENCGKEFTS  120
WKSLLDHGRC SFDEDDDLDG SLRSSSPPHN NADEGLDEDD EEEGDLALAS GWSKGKRSRR  180
AKVMIAGSSA ISEVQQPAPS SEEEDLANCL VMLSSSRVTQ PTVHVDADQE SSASASKDEE  240
RNKLLVPQPL SIIPPMTAQF KFSAPQVVVA QHVPTVPRGL FECKACKKVF TSHQALGGHR  300
ASHKKVKGCF AAKLESSRNE STHQQAMASA ALHDNTRAIP EAVGDTSTAE GKSGNLDAGK  360
ATSVGAGEFV VPAATTEMAI MPIADAAPVA AAFSPFKKKG KVHECSICHR VFTSGQALGG  420
HKRCHWLTSS ATDPAKLQPV VPDHLMAAMC HHLTLGRPMF DAADQRILDL NVPTNPSAEA  480
VATRQAAELN DIPLCLNAPA SMYVQSWTGH SNASHVNKTG TSSRNDAAAG GGAATEDEAD  540
STSAKRAKVS DLKDMKVAGE SLSWLQVGIG ISSSENNEKS AQEGA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	7e-19	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG038320.2