PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC6AG023860.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 261aa MW: 27112.6 Da PI: 9.4324 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.5 | 9.4e-08 | 57 | 82 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ TRIDC6AG023860.7 57 KTKLCNKYNTAEGCKWGDKCHFAHGE 82 8***********************96 PP | |||||||
2 | zf-CCCH | 35.9 | 1.3e-11 | 227 | 252 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC6AG023860.7 227 FKTKLCDNFTK-GSCTFGDRCHFAHGE 252 69*********.*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence |
TAGCPFGEGC HFLHYFPGGH QAVAKMSNLG GQAFAHPQGR MPSGSAVPDG HPTPTVKTKL 60 CNKYNTAEGC KWGDKCHFAH GERELGKQTF INNSMPPHMG PRPTGHFGPP AMPSPGMATP 120 AGFGASSTAK VSVNASLAGA IIGRGGVNTK QISRVTGAKL AIRDHESNEA LKNIELEGTF 180 DQINNASAML RELIFRISGG ANAPPPGVIP AGGSHRGGGG SGQGSNFKTK LCDNFTKGSC 240 TFGDRCHFAH GENELRKSAP V |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-54 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC6AG023860.7 |