PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC6AG023860.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 271aa MW: 28362 Da PI: 10.3268 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.5 | 9.9e-08 | 67 | 92 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ TRIDC6AG023860.4 67 KTKLCNKYNTAEGCKWGDKCHFAHGE 92 8***********************96 PP | |||||||
2 | zf-CCCH | 35.8 | 1.3e-11 | 237 | 262 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC6AG023860.4 237 FKTKLCDNFTK-GSCTFGDRCHFAHGE 262 69*********.*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence |
RRRRRQAHAS TAGCPFGEGC HFLHYFPGGH QAVAKMSNLG GQAFAHPQGR MPSGSAVPDG 60 HPTPTVKTKL CNKYNTAEGC KWGDKCHFAH GERELGKQTF INNSMPPHMG PRPTGHFGPP 120 AMPSPGMATP AGFGASSTAK VSVNASLAGA IIGRGGVNTK QISRVTGAKL AIRDHESNEA 180 LKNIELEGTF DQINNASAML RELIFRISGG ANAPPPGVIP AGGSHRGGGG SGQGSNFKTK 240 LCDNFTKGSC TFGDRCHFAH GENELRKSAA V |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-54 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC6AG023860.4 |