PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6AG023860.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 236aa    MW: 24472.6 Da    PI: 9.9656
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6AG023860.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.2e-083257227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      kt+lC+ +     Ck Gd+C+FaHg+
  TRIDC6AG023860.1 32 KTKLCNKYNTAEGCKWGDKCHFAHGE 57
                      8***********************96 PP
2zf-CCCH36.11.1e-11202227127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt+lC++f + G C +GdrC+FaHg+
  TRIDC6AG023860.1 202 FKTKLCDNFTK-GSCTFGDRCHFAHGE 227
                       69*********.*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MSNLGGQAFA HPQGRMPSGS AVPDGHPTPT VKTKLCNKYN TAEGCKWGDK CHFAHGEREL  60
GKQTFINNSM PPHMGPRPTG HFGPPAMPSP GMATPAGFGA SSTAKVSVNA SLAGAIIGRG  120
GVNTKQISRV TGAKLAIRDH ESNEALKNIE LEGTFDQINN ASAMLRELIF RISGGANAPP  180
PGVIPAGGSH RGGGGSGQGS NFKTKLCDNF TKGSCTFGDR CHFAHGENEL RKSAAV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-55C3H family protein