PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC6AG023850.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 196aa MW: 20364.2 Da PI: 10.6383

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG023850.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.1	6.3e-08	32	57	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ TRIDC6AG023850.2 32 KTKLCNKYNTAEGCKWGDKCHFAHGE 57 8***********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence
MSNLGGQAFA QPQGRMPAGS AVPDGQPTPT VKTKLCNKYN TAEGCKWGDK CHFAHGEREL 60 GKHTFINNSM PPRMGTRPIG HFGPPAMPGP AMTTPTGFGA SSTAKVSVDA SLVGGIIGRG 120 GVNTKQISGV TGAKLAIRLE DLTAAAAAVS REATSRPSCA TTSRKDRARL ATDATLPMAR 180 TSCANRLPRE VDLPTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	1e-12	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG023850.2