PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC6AG020940.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CO-like

Protein Properties

Length: 364aa MW: 38010.4 Da PI: 5.8824

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG020940.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.9	8.6e-08	58	103	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e ++ C+ + lC+ C +H+ H++vp+ TRIDC6AG020940.1 58 VWVCEVCELAPAAVTCKADAAALCAACDADIHHAnplarrHERVPV 103 689****************************645599999999986 PP
2	CCT	71.1	2.7e-24	289	332	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+FeK+irY+sRKa+AesRpRvKGrF+k+a TRIDC6AG020940.1 289 REARLMRYREKRKNRRFEKTIRYASRKAYAESRPRVKGRFAKRA 332 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MELQGLGRYW GVGGRRCGSC RGSPAAVHCR TCDGGSGDGA YLCAGCGEGH ARAGHERVWV 60 CEVCELAPAA VTCKADAAAL CAACDADIHH ANPLARRHER VPVQPIGSSS PEGQEQEQDA 120 FVMSFGGSVD GEKQQNPVVN LNDALEAGAG GKENVKLDFL FADMMDPFFG SELPRFPHAD 180 SVVPSGGAVE LDFGGVAAPV VVSNPSYSSY TAASLGGSGS SSEVGLVPDV ICGRGGGIIE 240 LDFAQSKAAY LPYTPTPSHS TVSSVDVGSV PERSDSAVAA ATPATGEGRE ARLMRYREKR 300 KNRRFEKTIR YASRKAYAES RPRVKGRFAK RADDADTDAV AAATITTPGP CVLDFGSYGV 360 VPTF

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MELQGLGRYW GVGGRRCGSC RGSPAAVHCR TCDGGSGDGA YLCAGCGEGH ARAGHERVWV  60
CEVCELAPAA VTCKADAAAL CAACDADIHH ANPLARRHER VPVQPIGSSS PEGQEQEQDA  120
FVMSFGGSVD GEKQQNPVVN LNDALEAGAG GKENVKLDFL FADMMDPFFG SELPRFPHAD  180
SVVPSGGAVE LDFGGVAAPV VVSNPSYSSY TAASLGGSGS SSEVGLVPDV ICGRGGGIIE  240
LDFAQSKAAY LPYTPTPSHS TVSSVDVGSV PERSDSAVAA ATPATGEGRE ARLMRYREKR  300
KNRRFEKTIR YASRKAYAES RPRVKGRFAK RADDADTDAV AAATITTPGP CVLDFGSYGV  360
VPTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	6e-33	CO-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG020940.1