PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6AG018730.12
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 520aa    MW: 59048 Da    PI: 9.3008
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6AG018730.12genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.7e-2467168199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F   
  TRIDC6AG018730.12  67 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELVAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFISAKRLVAGDSVLFI-- 154
                        99*****************************86555544..8************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  TRIDC6AG018730.12 155 WNDNNQLLLGIRRA 168
                        7777778***9997 PP
2Auxin_resp121.85.2e-40193276183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  TRIDC6AG018730.12 193 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 276
                        79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    
MESQIPNYPN LPPQLICQLH NVTMHADAET DEVYAQMTLQ PLSPQELKDP FLPAELGNAS  60
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFTQ QPPAQELVAK DLHGNEWKFR  120
HIFRGQPKRH LLTTGWSVFI SAKRLVAGDS VLFIWNDNNQ LLLGIRRANR SQTVMPSSVL  180
SSDSMHIGLL AAAAHAASTN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RISVGMRFRM  240
LFETEESSVR RYMGTITGIS DLDPARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  300
TYPMYSSPFP MRLKRPWPTG LRGKEDDLTS SLMWLRDGAN PGFQSFSFGG LGMSPWMQPM  360
MDSSLLGLQP DMYQAMSAAA FQNTTKQVSP TLLQFQQPQN IAGRSALLSS QILQQVQPQF  420
QEMHHQNIND SAIQGHNQSE YLQQQLQRCQ SFNGQKSPPP QQQESHHQHQ QQQSQCIFPP  480
PISLHLPHCR QFQRSHSSRT FKTEISALFL HRMSRPCMTH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein