PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

TRIDC6AG015580.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 763aa MW: 84877.9 Da PI: 7.7507

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG015580.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.4	6.6e-10	465	511	6	52
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++ +e +++L + F+++ ps+e +e L+++lg++ +++ WF+N R TRIDC6AG015580.5 465 RIPPEAVQVLRKSFAESELPSREVKENLSTELGISFEKIDKWFKNTR 511 667899***************************************99 PP
2	PHD	33	1.4e-11	201	254	1	50
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ C++ s ++++++C+g Ck ++H kCl+++l+++ g wlC+ C + TRIDC6AG015580.5 201 ICSRCKSpeSVPNNKFIFCEGaCKMAYHEKCLEPPLDKSLP-TGgpGWLCKFCLC 254 6999987778***966**********95555.4559*****86 PP

Sequence ? help Back to Top
Protein Sequence Length: 763 aa Download sequence
MNNSDKKSAC SIPRRSSERR KQSSSELVSS AKRSTGHNTS SSYKPDHCSP PKRTVRTVRN 60 VNLAKYIKNK YYRSPLSKRQ ASNAATGKTA TGPVRRRNRK RRRHNTDCDE ATRMERRARY 120 LLVKIKSEQN LIDAYSGDGW NGHSREKLKP EKELQRAQKQ IIKCKIAIRD IIHQLDLYSS 180 SGSMEDSVMP PDESVNPDNT ICSRCKSPES VPNNKFIFCE GACKMAYHEK CLEPPLDKSL 240 PTGGPGWLCK FCLCKMKILE AVNAHLGTSL TVMCPSKDIF KEATKQMDSE DGLGEDWLSE 300 YSGDEDYDPE ENDFTSSSLD SGEESISDQS NCSGSPLYSP NDDIPGFISA DFTDAEGFYH 360 TNSNLGIDSD DDDVAEMLTY QRSKLLISIT LVQQVGALTA FHPSQEMFGK LTENEKQSED 420 EDWGTNNRRK KRRVDSAGVG VKSAEGSLDV KSNEKAQPQR RKLFRIPPEA VQVLRKSFAE 480 SELPSREVKE NLSTELGISF EKIDKWFKNT RCAALRDRKA EGNSRVAGPS KRSKQSAGKS 540 GSLGKIDSVD NSYLLPMPEI ISVPTHPQGI PERKPESTSR TVRRRVHDKG APLCPPAPAE 600 VKESTSPTTK PGLNPSHVAD RIINTEHRAA SREDPVAFSD DPFFDAILSY PTINTNDRAV 660 SREDPVAFSD DPFLDVMLAN RDIYTEERAA SHEDVRRPSS DQPFLDVIQN VCGLEHRLQR 720 LKGDMLSSAA APGGAGTAER DLQNQLVVLV PTAELKDKSQ PSI

Sequence ? help Back to Top

Protein Sequence Length: 763 aa Download sequence

MNNSDKKSAC SIPRRSSERR KQSSSELVSS AKRSTGHNTS SSYKPDHCSP PKRTVRTVRN  60
VNLAKYIKNK YYRSPLSKRQ ASNAATGKTA TGPVRRRNRK RRRHNTDCDE ATRMERRARY  120
LLVKIKSEQN LIDAYSGDGW NGHSREKLKP EKELQRAQKQ IIKCKIAIRD IIHQLDLYSS  180
SGSMEDSVMP PDESVNPDNT ICSRCKSPES VPNNKFIFCE GACKMAYHEK CLEPPLDKSL  240
PTGGPGWLCK FCLCKMKILE AVNAHLGTSL TVMCPSKDIF KEATKQMDSE DGLGEDWLSE  300
YSGDEDYDPE ENDFTSSSLD SGEESISDQS NCSGSPLYSP NDDIPGFISA DFTDAEGFYH  360
TNSNLGIDSD DDDVAEMLTY QRSKLLISIT LVQQVGALTA FHPSQEMFGK LTENEKQSED  420
EDWGTNNRRK KRRVDSAGVG VKSAEGSLDV KSNEKAQPQR RKLFRIPPEA VQVLRKSFAE  480
SELPSREVKE NLSTELGISF EKIDKWFKNT RCAALRDRKA EGNSRVAGPS KRSKQSAGKS  540
GSLGKIDSVD NSYLLPMPEI ISVPTHPQGI PERKPESTSR TVRRRVHDKG APLCPPAPAE  600
VKESTSPTTK PGLNPSHVAD RIINTEHRAA SREDPVAFSD DPFFDAILSY PTINTNDRAV  660
SREDPVAFSD DPFLDVMLAN RDIYTEERAA SHEDVRRPSS DQPFLDVIQN VCGLEHRLQR  720
LKGDMLSSAA APGGAGTAER DLQNQLVVLV PTAELKDKSQ PSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	103	RKRRR
2	99	126	RKRRRHNTDCDEATRMERRARYLLVKIK
3	100	127	RKRRRHNTDCDEATRMERRARYLLVKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	6e-50	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG015580.5