PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG005120.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 870aa MW: 97597.8 Da PI: 7.2389

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG005120.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.9	8.3e-06	557	579	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg +F+ + +Lk+H+++H TRIDC6AG005120.5 557 HTCEECGACFRKPAHLKQHMQSH 579 79*******************99 PP
2	zf-C2H2	20.7	1.1e-06	585	609	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dC+ s+ rk++L+rH+ tH TRIDC6AG005120.5 585 FACPleDCPFSYIRKDHLNRHMLTH 609 78**********************9 PP
3	zf-C2H2	15.7	4.2e-05	614	639	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp Cgk+Fs k n +rH + H TRIDC6AG005120.5 614 FTCPleGCGKRFSIKANIQRHVKEmH 639 89********************9988 PP
4	zf-C2H2	15.4	5.5e-05	658	680	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ C+k F+ +s+Lk+H +H TRIDC6AG005120.5 658 CQeeGCKKAFKYPSQLKKHEESH 680 77779**************9988 PP
5	zf-C2H2	15.2	6.1e-05	747	771	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C sFs+ksnL++H++ H TRIDC6AG005120.5 747 KCSfdGCECSFSTKSNLNKHMKAcH 771 799999****************955 PP

Sequence ? help Back to Top
Protein Sequence Length: 870 aa Download sequence
MNRSVCHHLL AQCRSLRELK SIHARAVTHG LHPCNQSISC KLFRCYADFG RPAEARRLFG 60 EIPCPDLVSF TSLMSLHLQL NQHHEAMFTF SCAIASGHRP DGFVVVGALS ASGGAGDLCA 120 GSAVHGLIFR CGLGSELVVG NALVDMYCRC GRFEGALGVF DEMAVKDEVT WGSMLHGYMK 180 CVGVDSALSF FDRMPVKSMV SWTALVTGHV QAKQPIRALE IFGRMVLEGH RPTHVTIVGV 240 LSACADIGSL DLGRVIHGYG SKFNISTNVI VSNALMDMYA KSGSIEMAFA VFEEVLVKDA 300 FTWTTMISSF TVQGDGIKAL ELFEDMLRSG IVPNSVTFVS VLSACSHAGL IQQGRELFDK 360 MRRIYNIKPQ LEHYGCIVDL LGRGGLLEEA EALIYDMDVE PDTVIWRSLL SACLVHGNDR 420 LAEIAGQEII KREPGDDGVY VLLWNIYASS DRWKQALDIR KQMLTRKIFK KPGCSWIEVD 480 GGVHEFLMSS GDGIDGDEKS EETHGKDIRR IKCEFCTVVR SKMYLIRAHM VAQHKDELDA 540 SEIYDSNGEK VVYGVGHTCE ECGACFRKPA HLKQHMQSHS KERSFACPLE DCPFSYIRKD 600 HLNRHMLTHE GKLFTCPLEG CGKRFSIKAN IQRHVKEMHE DEHECKMDDT KSNQQVICQE 660 EGCKKAFKYP SQLKKHEESH AKLDYVEVVC CEPGCLKTFT NAKCLRAHNQ SCHLYTHCDI 720 CGEKHLRKNI KRHLRAHDEV HSTERLKCSF DGCECSFSTK SNLNKHMKAC HDQVRPFECR 780 VAGCGKTFPY KHVRDNHEKS SCHVYVEGDY EEMDEQLRSR RGGGRKRSAV TVETLTRKRV 840 TIPSEVSLLD DGAEYMRWML SDGDGSNHAE

Sequence ? help Back to Top

Protein Sequence Length: 870 aa Download sequence

MNRSVCHHLL AQCRSLRELK SIHARAVTHG LHPCNQSISC KLFRCYADFG RPAEARRLFG  60
EIPCPDLVSF TSLMSLHLQL NQHHEAMFTF SCAIASGHRP DGFVVVGALS ASGGAGDLCA  120
GSAVHGLIFR CGLGSELVVG NALVDMYCRC GRFEGALGVF DEMAVKDEVT WGSMLHGYMK  180
CVGVDSALSF FDRMPVKSMV SWTALVTGHV QAKQPIRALE IFGRMVLEGH RPTHVTIVGV  240
LSACADIGSL DLGRVIHGYG SKFNISTNVI VSNALMDMYA KSGSIEMAFA VFEEVLVKDA  300
FTWTTMISSF TVQGDGIKAL ELFEDMLRSG IVPNSVTFVS VLSACSHAGL IQQGRELFDK  360
MRRIYNIKPQ LEHYGCIVDL LGRGGLLEEA EALIYDMDVE PDTVIWRSLL SACLVHGNDR  420
LAEIAGQEII KREPGDDGVY VLLWNIYASS DRWKQALDIR KQMLTRKIFK KPGCSWIEVD  480
GGVHEFLMSS GDGIDGDEKS EETHGKDIRR IKCEFCTVVR SKMYLIRAHM VAQHKDELDA  540
SEIYDSNGEK VVYGVGHTCE ECGACFRKPA HLKQHMQSHS KERSFACPLE DCPFSYIRKD  600
HLNRHMLTHE GKLFTCPLEG CGKRFSIKAN IQRHVKEMHE DEHECKMDDT KSNQQVICQE  660
EGCKKAFKYP SQLKKHEESH AKLDYVEVVC CEPGCLKTFT NAKCLRAHNQ SCHLYTHCDI  720
CGEKHLRKNI KRHLRAHDEV HSTERLKCSF DGCECSFSTK SNLNKHMKAC HDQVRPFECR  780
VAGCGKTFPY KHVRDNHEKS SCHVYVEGDY EEMDEQLRSR RGGGRKRSAV TVETLTRKRV  840
TIPSEVSLLD DGAEYMRWML SDGDGSNHAE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-114	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG005120.5